miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18789 3' -57.3 NC_004683.1 + 928 0.66 0.634909
Target:  5'- gGCGUGCCcgGAUGGccagcgcgUGAUCuucaaGgCGCGCa -3'
miRNA:   3'- -UGCGCGG--CUACC--------ACUAGua---CgGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 2126 0.69 0.409806
Target:  5'- uCGCcCUGGUGGUGGcgggCGUgGCCGUGCu -3'
miRNA:   3'- uGCGcGGCUACCACUa---GUA-CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 2157 0.71 0.340763
Target:  5'- gGCGgGCCuggGGUGGUCccugauUGCCGCGg -3'
miRNA:   3'- -UGCgCGGcuaCCACUAGu-----ACGGCGCg -5'
18789 3' -57.3 NC_004683.1 + 3183 0.72 0.29476
Target:  5'- uGCGCGgCGgcGGUGAgacacgCAuUGCCGCGg -3'
miRNA:   3'- -UGCGCgGCuaCCACUa-----GU-ACGGCGCg -5'
18789 3' -57.3 NC_004683.1 + 4035 0.7 0.399807
Target:  5'- uGCGCGCCGcccucgGGUGcgagcacgggGUCGaccucuucagcgaUGCUGCGCa -3'
miRNA:   3'- -UGCGCGGCua----CCAC----------UAGU-------------ACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 5920 0.69 0.409806
Target:  5'- -gGCGCCu-UGGcGGcgGUGCCGCGCg -3'
miRNA:   3'- ugCGCGGcuACCaCUagUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 6678 0.71 0.348917
Target:  5'- gGCGCGCCGcUGGUGuggcuggcaCGUGUCGCcCg -3'
miRNA:   3'- -UGCGCGGCuACCACua-------GUACGGCGcG- -5'
18789 3' -57.3 NC_004683.1 + 6722 0.68 0.511372
Target:  5'- -gGCGUCGAUggcagccugagccucGGUGuuGUCGgcgaacugGCCGCGCa -3'
miRNA:   3'- ugCGCGGCUA---------------CCAC--UAGUa-------CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 6814 0.66 0.602455
Target:  5'- uACGCGCuCGAUGuGUcgacgcuggaccGGUCGcGCCGCa- -3'
miRNA:   3'- -UGCGCG-GCUAC-CA------------CUAGUaCGGCGcg -5'
18789 3' -57.3 NC_004683.1 + 8362 0.72 0.280538
Target:  5'- uACGuCGCCGucuccugacGGUGAUCGgccCCGCGCg -3'
miRNA:   3'- -UGC-GCGGCua-------CCACUAGUac-GGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 10354 0.66 0.602455
Target:  5'- aGCGCGCCGAgaaGGcGuUC--GCCGaCGCg -3'
miRNA:   3'- -UGCGCGGCUa--CCaCuAGuaCGGC-GCG- -5'
18789 3' -57.3 NC_004683.1 + 10514 0.66 0.591675
Target:  5'- uCGCGCCGAggaGGaGAagcUCAagagGCUGCGUg -3'
miRNA:   3'- uGCGCGGCUa--CCaCU---AGUa---CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 12787 0.74 0.206479
Target:  5'- cGCGCGCCGA-GGaugccGAggAUGCCGUGCc -3'
miRNA:   3'- -UGCGCGGCUaCCa----CUagUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 13497 0.73 0.25374
Target:  5'- gGCcUGCCGAUGGacgcGAUCAUGaCCGCGa -3'
miRNA:   3'- -UGcGCGGCUACCa---CUAGUAC-GGCGCg -5'
18789 3' -57.3 NC_004683.1 + 14322 0.7 0.382908
Target:  5'- uACGgGCCGcUGGUGGUCGga-UGUGCg -3'
miRNA:   3'- -UGCgCGGCuACCACUAGUacgGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 14826 0.68 0.497039
Target:  5'- uACGCGCCcaca--GAUCGUugGCCGCGCc -3'
miRNA:   3'- -UGCGCGGcuaccaCUAGUA--CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 15093 0.67 0.538426
Target:  5'- cCGCGCCGA-GGcgcGAguUCGUGCCGUu- -3'
miRNA:   3'- uGCGCGGCUaCCa--CU--AGUACGGCGcg -5'
18789 3' -57.3 NC_004683.1 + 16182 0.67 0.559564
Target:  5'- cGCaCGCCGgcGGUuucgacGAUgAcGCCGCGCa -3'
miRNA:   3'- -UGcGCGGCuaCCA------CUAgUaCGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 20494 0.71 0.324871
Target:  5'- -gGgGCCGGUGGUGGag--GCCGgGCg -3'
miRNA:   3'- ugCgCGGCUACCACUaguaCGGCgCG- -5'
18789 3' -57.3 NC_004683.1 + 20606 0.76 0.162599
Target:  5'- -gGUGCCGccGGUGAUCGUGCCGgauugguuaccCGCc -3'
miRNA:   3'- ugCGCGGCuaCCACUAGUACGGC-----------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.