miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18789 3' -57.3 NC_004683.1 + 38883 0.67 0.548963
Target:  5'- aACGCGacucCCGAUGaGcUGGggAUGCCGCGg -3'
miRNA:   3'- -UGCGC----GGCUAC-C-ACUagUACGGCGCg -5'
18789 3' -57.3 NC_004683.1 + 48502 0.69 0.409806
Target:  5'- -aGCGgUGgcGGUgcGAUCaAUGCCGCGCc -3'
miRNA:   3'- ugCGCgGCuaCCA--CUAG-UACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 2126 0.69 0.409806
Target:  5'- uCGCcCUGGUGGUGGcgggCGUgGCCGUGCu -3'
miRNA:   3'- uGCGcGGCUACCACUa---GUA-CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 52036 0.69 0.428378
Target:  5'- cCGCGCCGA-GGcUGGgaacCGUGCCcgacGCGCc -3'
miRNA:   3'- uGCGCGGCUaCC-ACUa---GUACGG----CGCG- -5'
18789 3' -57.3 NC_004683.1 + 54147 0.69 0.437848
Target:  5'- uCGaCGCCGAgcGGccaaaGGUCAacgGCCGCGCg -3'
miRNA:   3'- uGC-GCGGCUa-CCa----CUAGUa--CGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 36957 0.69 0.447438
Target:  5'- uUGCGCUGAaaccGUGGUCGUcCUGCGCg -3'
miRNA:   3'- uGCGCGGCUac--CACUAGUAcGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 50353 0.69 0.457143
Target:  5'- cCGCGCCGAgc-UGAUCGcgauggGCCGCuGCc -3'
miRNA:   3'- uGCGCGGCUaccACUAGUa-----CGGCG-CG- -5'
18789 3' -57.3 NC_004683.1 + 55376 0.68 0.46696
Target:  5'- -gGCGCCGAaucc-GUCGUGCUGUGCg -3'
miRNA:   3'- ugCGCGGCUaccacUAGUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 21105 0.67 0.527958
Target:  5'- cAC-CGUCGGcgaccaagguguUGGUGcUgAUGCCGCGCu -3'
miRNA:   3'- -UGcGCGGCU------------ACCACuAgUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 53498 0.7 0.400709
Target:  5'- gGCGCacaaucGCUGGUGcGuUGAUCcgGCuCGCGCa -3'
miRNA:   3'- -UGCG------CGGCUAC-C-ACUAGuaCG-GCGCG- -5'
18789 3' -57.3 NC_004683.1 + 43659 0.7 0.400709
Target:  5'- -aGUGCUGcaGGUGcUCGUGCCGCaGCu -3'
miRNA:   3'- ugCGCGGCuaCCACuAGUACGGCG-CG- -5'
18789 3' -57.3 NC_004683.1 + 38745 0.7 0.391743
Target:  5'- cACGCGaccaCGAacaUGGUGGcCgaguucuacgagGUGCCGCGCg -3'
miRNA:   3'- -UGCGCg---GCU---ACCACUaG------------UACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 13497 0.73 0.25374
Target:  5'- gGCcUGCCGAUGGacgcGAUCAUGaCCGCGa -3'
miRNA:   3'- -UGcGCGGCUACCa---CUAGUAC-GGCGCg -5'
18789 3' -57.3 NC_004683.1 + 8362 0.72 0.280538
Target:  5'- uACGuCGCCGucuccugacGGUGAUCGgccCCGCGCg -3'
miRNA:   3'- -UGC-GCGGCua-------CCACUAGUac-GGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 3183 0.72 0.29476
Target:  5'- uGCGCGgCGgcGGUGAgacacgCAuUGCCGCGg -3'
miRNA:   3'- -UGCGCgGCuaCCACUa-----GU-ACGGCGCg -5'
18789 3' -57.3 NC_004683.1 + 20494 0.71 0.324871
Target:  5'- -gGgGCCGGUGGUGGag--GCCGgGCg -3'
miRNA:   3'- ugCgCGGCUACCACUaguaCGGCgCG- -5'
18789 3' -57.3 NC_004683.1 + 2157 0.71 0.340763
Target:  5'- gGCGgGCCuggGGUGGUCccugauUGCCGCGg -3'
miRNA:   3'- -UGCgCGGcuaCCACUAGu-----ACGGCGCg -5'
18789 3' -57.3 NC_004683.1 + 6678 0.71 0.348917
Target:  5'- gGCGCGCCGcUGGUGuggcuggcaCGUGUCGCcCg -3'
miRNA:   3'- -UGCGCGGCuACCACua-------GUACGGCGcG- -5'
18789 3' -57.3 NC_004683.1 + 52447 0.7 0.374207
Target:  5'- gACGCGC----GGUGcuccCGUGCCGCGCg -3'
miRNA:   3'- -UGCGCGgcuaCCACua--GUACGGCGCG- -5'
18789 3' -57.3 NC_004683.1 + 14322 0.7 0.382908
Target:  5'- uACGgGCCGcUGGUGGUCGga-UGUGCg -3'
miRNA:   3'- -UGCgCGGCuACCACUAGUacgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.