Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 19229 | 0.7 | 0.188979 |
Target: 5'- gUGGCCgcCGCCGggUCGaacGCGGuGCGCGUCg -3' miRNA: 3'- aGCCGGa-GCGGC--AGC---CGCU-CGCGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 42728 | 0.7 | 0.193817 |
Target: 5'- -gGGgCUCGCUGUCGGUauccGGCGCGa- -3' miRNA: 3'- agCCgGAGCGGCAGCCGc---UCGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 5085 | 0.7 | 0.198764 |
Target: 5'- uUCGGCCgugaCGCCGaagaggUCaagGGCGAGCuGCGUg -3' miRNA: 3'- -AGCCGGa---GCGGC------AG---CCGCUCG-CGCAg -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 2119 | 0.69 | 0.203821 |
Target: 5'- gUGGCCaUCGCCcugguggUGGCGGGCGUGg- -3' miRNA: 3'- aGCCGG-AGCGGca-----GCCGCUCGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 8176 | 0.69 | 0.208989 |
Target: 5'- cCaGCCUCgggGUCGUCGGCGccgucgAGCGgGUCa -3' miRNA: 3'- aGcCGGAG---CGGCAGCCGC------UCGCgCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 12316 | 0.69 | 0.212143 |
Target: 5'- aUCGGCa-CGCCGggcgcucccgcccCGGCGGGCGUGg- -3' miRNA: 3'- -AGCCGgaGCGGCa------------GCCGCUCGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 5754 | 0.69 | 0.214269 |
Target: 5'- aCGGCCUCgagcucguccuuGCCuUCGGCGAacagcaGCGCGa- -3' miRNA: 3'- aGCCGGAG------------CGGcAGCCGCU------CGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 26291 | 0.69 | 0.214269 |
Target: 5'- uUCGGCggcguuCUCGaCCuggCgGGCGAGCGCGUUg -3' miRNA: 3'- -AGCCG------GAGC-GGca-G-CCGCUCGCGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 32954 | 0.69 | 0.214269 |
Target: 5'- aUUGGCCUCGauCCgGUCGaCGAGUGCGg- -3' miRNA: 3'- -AGCCGGAGC--GG-CAGCcGCUCGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 31584 | 0.69 | 0.214269 |
Target: 5'- gUCGGCCUaCGCCugGUCccaGGCGAGCGa--- -3' miRNA: 3'- -AGCCGGA-GCGG--CAG---CCGCUCGCgcag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 24759 | 0.69 | 0.219664 |
Target: 5'- aUGGCCUCGaugaCGUCGGgGuuGGUGCG-Ca -3' miRNA: 3'- aGCCGGAGCg---GCAGCCgC--UCGCGCaG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 9328 | 0.69 | 0.219664 |
Target: 5'- -gGGUCUUacgaGCCGUcgcCGGCcAGCGCGUCc -3' miRNA: 3'- agCCGGAG----CGGCA---GCCGcUCGCGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 26329 | 0.69 | 0.225174 |
Target: 5'- aUCGaCCggCGCUGUCGGCG-GUGCGa- -3' miRNA: 3'- -AGCcGGa-GCGGCAGCCGCuCGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 24235 | 0.69 | 0.230801 |
Target: 5'- gCGGCCUUGUgcagGUCGGCGAuCGCcUCg -3' miRNA: 3'- aGCCGGAGCGg---CAGCCGCUcGCGcAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 5911 | 0.69 | 0.236546 |
Target: 5'- gCGGCggUGCCGcgCGGCGAGCuGC-UCg -3' miRNA: 3'- aGCCGgaGCGGCa-GCCGCUCG-CGcAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 45575 | 0.69 | 0.236546 |
Target: 5'- gUGGCgacgaGCCgGUCGGUgcgGGGCGCGUCg -3' miRNA: 3'- aGCCGgag--CGG-CAGCCG---CUCGCGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 6628 | 0.68 | 0.24241 |
Target: 5'- cUCGGCCggCGCCuguGUgGuuGCGGGCGCGg- -3' miRNA: 3'- -AGCCGGa-GCGG---CAgC--CGCUCGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 3366 | 0.68 | 0.24241 |
Target: 5'- gUCGGCCa-GgCGUCGGCGGGCcugccCGUa -3' miRNA: 3'- -AGCCGGagCgGCAGCCGCUCGc----GCAg -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 12225 | 0.68 | 0.248395 |
Target: 5'- aCGGCUUgGCCGaaUCGGCccuGCcuGCGUCg -3' miRNA: 3'- aGCCGGAgCGGC--AGCCGcu-CG--CGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 51669 | 0.68 | 0.248395 |
Target: 5'- cUCGGCCUgG-CGaCGGuCGAGCcCGUCg -3' miRNA: 3'- -AGCCGGAgCgGCaGCC-GCUCGcGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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