miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 56263 0.7 0.263181
Target:  5'- gCUGACGa--UGCGGgugggCGCGGUGGCCa -3'
miRNA:   3'- -GGCUGCcagACGCCa----GCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 40868 0.7 0.263181
Target:  5'- gCCGuCGGcgagCgcguCGGUCGCGGCGGUCa -3'
miRNA:   3'- -GGCuGCCa---Gac--GCCAGCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 15893 0.7 0.263181
Target:  5'- uUCGGCaagGGUC-GCGGUCaCaGCGGCCCu -3'
miRNA:   3'- -GGCUG---CCAGaCGCCAGcGcCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 12934 0.7 0.263181
Target:  5'- gCGAuucCGGUCUGCGaGUaGCGGCcuGCCg -3'
miRNA:   3'- gGCU---GCCAGACGC-CAgCGCCGu-CGGg -5'
18825 3' -61.3 NC_004683.1 + 12113 0.7 0.269595
Target:  5'- uCCGGCGGUagccccgcGCGGgCGCGcUGGCCCg -3'
miRNA:   3'- -GGCUGCCAga------CGCCaGCGCcGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 53660 0.7 0.269595
Target:  5'- gCCGGCGGU--GCGGccggcgucugcCGCGGCGuuGCCCu -3'
miRNA:   3'- -GGCUGCCAgaCGCCa----------GCGCCGU--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 3355 0.7 0.274159
Target:  5'- gUCGGCGGgcCUGCccguaguuugaguaGGUCGCcGCGGCCa -3'
miRNA:   3'- -GGCUGCCa-GACG--------------CCAGCGcCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 26333 0.7 0.275475
Target:  5'- aCCGGCGcuGUCgGCGGUgcgaggcCGCGuuGGCCCu -3'
miRNA:   3'- -GGCUGC--CAGaCGCCA-------GCGCcgUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 21943 0.7 0.276134
Target:  5'- cCCGGCGGUg-GCGG--GCGGCcGCCg -3'
miRNA:   3'- -GGCUGCCAgaCGCCagCGCCGuCGGg -5'
18825 3' -61.3 NC_004683.1 + 33515 0.7 0.276135
Target:  5'- gCGGCGGUCggccaGUGGU-GCGGUacgAGCUCa -3'
miRNA:   3'- gGCUGCCAGa----CGCCAgCGCCG---UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 53716 0.69 0.2828
Target:  5'- gCCG-CGGcCa--GGUCGCGGCGGgCCu -3'
miRNA:   3'- -GGCuGCCaGacgCCAGCGCCGUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 40306 0.69 0.289593
Target:  5'- cUCGGCGcGggcCUGCucggcGUCGUaGGCAGCCCg -3'
miRNA:   3'- -GGCUGC-Ca--GACGc----CAGCG-CCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 21572 0.69 0.296513
Target:  5'- gCGGCGGUg-GCGGgCGCGGCAuGaucaCCa -3'
miRNA:   3'- gGCUGCCAgaCGCCaGCGCCGU-Cg---GG- -5'
18825 3' -61.3 NC_004683.1 + 23355 0.69 0.303561
Target:  5'- gCCGGggacCGGgCUGCGGUCGa-GCAGUUCg -3'
miRNA:   3'- -GGCU----GCCaGACGCCAGCgcCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 32593 0.69 0.303561
Target:  5'- gCGGcCGGUCUGCGccacGUC-CGGCugcacgauGCCCg -3'
miRNA:   3'- gGCU-GCCAGACGC----CAGcGCCGu-------CGGG- -5'
18825 3' -61.3 NC_004683.1 + 41398 0.69 0.303561
Target:  5'- cCCGuCGG-CUGgCGG-CGUGGCugguguGGCCCu -3'
miRNA:   3'- -GGCuGCCaGAC-GCCaGCGCCG------UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 46688 0.69 0.310736
Target:  5'- cCCGACGG---GCGGUaCGUGGC-GCaCCg -3'
miRNA:   3'- -GGCUGCCagaCGCCA-GCGCCGuCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 23693 0.69 0.313642
Target:  5'- gCCGACGGguUCUcgacguuccgccgcgGCGGcaccgGCGGCGGCaCCa -3'
miRNA:   3'- -GGCUGCC--AGA---------------CGCCag---CGCCGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 3184 0.69 0.315836
Target:  5'- gCG-CGG-CgGCGGUgagacacgcauugcCGCGGCAGCCg -3'
miRNA:   3'- gGCuGCCaGaCGCCA--------------GCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 42587 0.69 0.320998
Target:  5'- gCGGCGGUCgggGcCGGUCGUccggcugggguggucGGCGaccgcgacgacGCCCg -3'
miRNA:   3'- gGCUGCCAGa--C-GCCAGCG---------------CCGU-----------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.