Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18959 | 3' | -55.4 | NC_004683.1 | + | 27022 | 0.66 | 0.730723 |
Target: 5'- uCGCGGguGACGGUCGcGGUGuaguucauCCGaGCAa -3' miRNA: 3'- -GCGCU--UUGCCAGCuCCGCu-------GGUaCGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 1661 | 0.66 | 0.698874 |
Target: 5'- gGCGGccguGCGGUUGGGGCcucGACgAUcGCAg -3' miRNA: 3'- gCGCUu---UGCCAGCUCCG---CUGgUA-CGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 41800 | 0.66 | 0.730723 |
Target: 5'- gGCaGGucucGCGG-CGAGGUGACCAccGCGa -3' miRNA: 3'- gCG-CUu---UGCCaGCUCCGCUGGUa-CGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 49142 | 0.66 | 0.709569 |
Target: 5'- cCGCGgcGCGGugacccauUCGGGcGCGugcaucgguaGCCGUGCGa -3' miRNA: 3'- -GCGCuuUGCC--------AGCUC-CGC----------UGGUACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 42242 | 0.66 | 0.720189 |
Target: 5'- gGCGuGAAUGGUCG-GGCGgacggaccGCCA-GCAg -3' miRNA: 3'- gCGC-UUUGCCAGCuCCGC--------UGGUaCGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 2465 | 0.66 | 0.751489 |
Target: 5'- gGCG-AACGGUCcGGuguucGCGugCAUGCu -3' miRNA: 3'- gCGCuUUGCCAGcUC-----CGCugGUACGu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 2749 | 0.66 | 0.74116 |
Target: 5'- uGCGcgGCGGcCGcGGCGAgCUcgGCGg -3' miRNA: 3'- gCGCuuUGCCaGCuCCGCU-GGuaCGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 24585 | 0.66 | 0.74116 |
Target: 5'- gGCGGcuaccuCGGcCucauggGAGGCGACCcgGCAu -3' miRNA: 3'- gCGCUuu----GCCaG------CUCCGCUGGuaCGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 33926 | 0.67 | 0.688116 |
Target: 5'- uGCGG--UGGUCccGGCGACCGcGCGa -3' miRNA: 3'- gCGCUuuGCCAGcuCCGCUGGUaCGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 55927 | 0.67 | 0.688116 |
Target: 5'- cCGUGGAGCuGGUgGAGGCauaaguGACCAccaucgGCAu -3' miRNA: 3'- -GCGCUUUG-CCAgCUCCG------CUGGUa-----CGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 53112 | 0.67 | 0.688116 |
Target: 5'- gGcCGggGCGuucGUCguugGAGGUGACCAUGUc -3' miRNA: 3'- gC-GCuuUGC---CAG----CUCCGCUGGUACGu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 51689 | 0.67 | 0.688116 |
Target: 5'- aCGCc--GCGGuUCGAGGCaGCCGaGCAg -3' miRNA: 3'- -GCGcuuUGCC-AGCUCCGcUGGUaCGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 41863 | 0.67 | 0.666451 |
Target: 5'- gGCGcAACGGUCGucacuGGCaGGCCGagggGCGc -3' miRNA: 3'- gCGCuUUGCCAGCu----CCG-CUGGUa---CGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 33839 | 0.67 | 0.644659 |
Target: 5'- uGCGAGcucgcGCGGUCGccGgGACCAccGCAg -3' miRNA: 3'- gCGCUU-----UGCCAGCucCgCUGGUa-CGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 45282 | 0.67 | 0.644659 |
Target: 5'- gGCGAGcgcGCGGUCGAaucGGUgaacgccgaacGACCggGCAa -3' miRNA: 3'- gCGCUU---UGCCAGCU---CCG-----------CUGGuaCGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 52754 | 0.67 | 0.655565 |
Target: 5'- -uCGggGCGGUCcuccauacuGGCGGCgAUGCGu -3' miRNA: 3'- gcGCuuUGCCAGcu-------CCGCUGgUACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 55842 | 0.67 | 0.644659 |
Target: 5'- aGCGAucUGGUCGGcguggucuGCGGCCAUGUc -3' miRNA: 3'- gCGCUuuGCCAGCUc-------CGCUGGUACGu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 25566 | 0.68 | 0.622821 |
Target: 5'- gGCc--GCGGUCGGcaacggcacGGCGGCCGUcGCAg -3' miRNA: 3'- gCGcuuUGCCAGCU---------CCGCUGGUA-CGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 21544 | 0.68 | 0.579315 |
Target: 5'- aGCGggGCGuGU-GAGGCGAaaCC-UGCGg -3' miRNA: 3'- gCGCuuUGC-CAgCUCCGCU--GGuACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 56255 | 0.68 | 0.579315 |
Target: 5'- uGCGGGugGG-CGcGGUGGCCAgcgcgGCGu -3' miRNA: 3'- gCGCUUugCCaGCuCCGCUGGUa----CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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