Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18959 | 3' | -55.4 | NC_004683.1 | + | 51334 | 1.09 | 0.001088 |
Target: 5'- cCGCGAAACGGUCGAGGCGACCAUGCAg -3' miRNA: 3'- -GCGCUUUGCCAGCUCCGCUGGUACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 21074 | 0.82 | 0.089214 |
Target: 5'- uGCGGGACGGUCGGcgacGGUGACCAggGCAu -3' miRNA: 3'- gCGCUUUGCCAGCU----CCGCUGGUa-CGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 37061 | 0.79 | 0.135724 |
Target: 5'- gGCGggGCGGUUcGGGCGGCgAUGCc -3' miRNA: 3'- gCGCuuUGCCAGcUCCGCUGgUACGu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 442 | 0.76 | 0.209064 |
Target: 5'- gGCGcgGCGGUCGAGGCgGAUCcgGUg -3' miRNA: 3'- gCGCuuUGCCAGCUCCG-CUGGuaCGu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 56649 | 0.74 | 0.284591 |
Target: 5'- gCGCGAAcagguccggcccAUGGUCGAGGCGGgCAagGCGc -3' miRNA: 3'- -GCGCUU------------UGCCAGCUCCGCUgGUa-CGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 26235 | 0.73 | 0.33784 |
Target: 5'- aCGCGAAGaGGUCGAGcGCGACaaucUGCu -3' miRNA: 3'- -GCGCUUUgCCAGCUC-CGCUGgu--ACGu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 52519 | 0.72 | 0.371376 |
Target: 5'- gGCGAucGCGGccgaCGAGGCGGCCAaggaaUGCc -3' miRNA: 3'- gCGCUu-UGCCa---GCUCCGCUGGU-----ACGu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 10938 | 0.72 | 0.380107 |
Target: 5'- aCGCGAAugGGccUCGAugGcGCGACCAUGa- -3' miRNA: 3'- -GCGCUUugCC--AGCU--C-CGCUGGUACgu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 44101 | 0.72 | 0.388975 |
Target: 5'- aCGCGAuc--GUCGAGGUGACCG-GCGc -3' miRNA: 3'- -GCGCUuugcCAGCUCCGCUGGUaCGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 5475 | 0.72 | 0.397977 |
Target: 5'- gGCGAuguguggcacGGCGuGUCcucGGCGGCCGUGCAg -3' miRNA: 3'- gCGCU----------UUGC-CAGcu-CCGCUGGUACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 45477 | 0.71 | 0.435287 |
Target: 5'- cCGCuGGuuGGCGGUCaGGGGUGGCCGUGa- -3' miRNA: 3'- -GCG-CU--UUGCCAG-CUCCGCUGGUACgu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 24787 | 0.71 | 0.453703 |
Target: 5'- gGCGuuGCGGUCGcGGCGgcgcgcgGCCAUGg- -3' miRNA: 3'- gCGCuuUGCCAGCuCCGC-------UGGUACgu -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 40708 | 0.71 | 0.454684 |
Target: 5'- aGUGc-GCGGUUGAGGCGAucgacgaugcUCAUGCGa -3' miRNA: 3'- gCGCuuUGCCAGCUCCGCU----------GGUACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 31649 | 0.7 | 0.464557 |
Target: 5'- uGCGGcccuGAUGGUCGGGuaucacgccuGCGAgCAUGCAg -3' miRNA: 3'- gCGCU----UUGCCAGCUC----------CGCUgGUACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 43785 | 0.7 | 0.473536 |
Target: 5'- gCGCGAuGCGGUCGGGGU--CCAuacccuugggcacUGCAc -3' miRNA: 3'- -GCGCUuUGCCAGCUCCGcuGGU-------------ACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 545 | 0.7 | 0.47454 |
Target: 5'- aGCGAGaccuACGGcccCGAGGUGGCCgaccuGUGCGa -3' miRNA: 3'- gCGCUU----UGCCa--GCUCCGCUGG-----UACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 53185 | 0.7 | 0.505107 |
Target: 5'- aCGaCGAacgccccggccGAUGGcUCGGGGCGuuuCCGUGCAc -3' miRNA: 3'- -GC-GCU-----------UUGCC-AGCUCCGCu--GGUACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 13340 | 0.7 | 0.505107 |
Target: 5'- cCGCu--GCGGUCGAcGGCGACgCcgAUGCGg -3' miRNA: 3'- -GCGcuuUGCCAGCU-CCGCUG-G--UACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 24132 | 0.7 | 0.505107 |
Target: 5'- cCGCGGcaaguACGucGUCGAGGCGAUCGccgaccUGCAc -3' miRNA: 3'- -GCGCUu----UGC--CAGCUCCGCUGGU------ACGU- -5' |
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18959 | 3' | -55.4 | NC_004683.1 | + | 8033 | 0.7 | 0.505107 |
Target: 5'- uGCGcaccGCGGUCGAGcGCGACaucgAUGCc -3' miRNA: 3'- gCGCuu--UGCCAGCUC-CGCUGg---UACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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