miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18959 3' -55.4 NC_004683.1 + 442 0.76 0.209064
Target:  5'- gGCGcgGCGGUCGAGGCgGAUCcgGUg -3'
miRNA:   3'- gCGCuuUGCCAGCUCCG-CUGGuaCGu -5'
18959 3' -55.4 NC_004683.1 + 545 0.7 0.47454
Target:  5'- aGCGAGaccuACGGcccCGAGGUGGCCgaccuGUGCGa -3'
miRNA:   3'- gCGCUU----UGCCa--GCUCCGCUGG-----UACGU- -5'
18959 3' -55.4 NC_004683.1 + 1661 0.66 0.698874
Target:  5'- gGCGGccguGCGGUUGGGGCcucGACgAUcGCAg -3'
miRNA:   3'- gCGCUu---UGCCAGCUCCG---CUGgUA-CGU- -5'
18959 3' -55.4 NC_004683.1 + 2465 0.66 0.751489
Target:  5'- gGCG-AACGGUCcGGuguucGCGugCAUGCu -3'
miRNA:   3'- gCGCuUUGCCAGcUC-----CGCugGUACGu -5'
18959 3' -55.4 NC_004683.1 + 2749 0.66 0.74116
Target:  5'- uGCGcgGCGGcCGcGGCGAgCUcgGCGg -3'
miRNA:   3'- gCGCuuUGCCaGCuCCGCU-GGuaCGU- -5'
18959 3' -55.4 NC_004683.1 + 5475 0.72 0.397977
Target:  5'- gGCGAuguguggcacGGCGuGUCcucGGCGGCCGUGCAg -3'
miRNA:   3'- gCGCU----------UUGC-CAGcu-CCGCUGGUACGU- -5'
18959 3' -55.4 NC_004683.1 + 8033 0.7 0.505107
Target:  5'- uGCGcaccGCGGUCGAGcGCGACaucgAUGCc -3'
miRNA:   3'- gCGCuu--UGCCAGCUC-CGCUGg---UACGu -5'
18959 3' -55.4 NC_004683.1 + 10938 0.72 0.380107
Target:  5'- aCGCGAAugGGccUCGAugGcGCGACCAUGa- -3'
miRNA:   3'- -GCGCUUugCC--AGCU--C-CGCUGGUACgu -5'
18959 3' -55.4 NC_004683.1 + 13340 0.7 0.505107
Target:  5'- cCGCu--GCGGUCGAcGGCGACgCcgAUGCGg -3'
miRNA:   3'- -GCGcuuUGCCAGCU-CCGCUG-G--UACGU- -5'
18959 3' -55.4 NC_004683.1 + 20572 0.68 0.61191
Target:  5'- gGCGggGCGucUGGuGGCGGCgGUGCGg -3'
miRNA:   3'- gCGCuuUGCcaGCU-CCGCUGgUACGU- -5'
18959 3' -55.4 NC_004683.1 + 21074 0.82 0.089214
Target:  5'- uGCGGGACGGUCGGcgacGGUGACCAggGCAu -3'
miRNA:   3'- gCGCUUUGCCAGCU----CCGCUGGUa-CGU- -5'
18959 3' -55.4 NC_004683.1 + 21544 0.68 0.579315
Target:  5'- aGCGggGCGuGU-GAGGCGAaaCC-UGCGg -3'
miRNA:   3'- gCGCuuUGC-CAgCUCCGCU--GGuACGU- -5'
18959 3' -55.4 NC_004683.1 + 24132 0.7 0.505107
Target:  5'- cCGCGGcaaguACGucGUCGAGGCGAUCGccgaccUGCAc -3'
miRNA:   3'- -GCGCUu----UGC--CAGCUCCGCUGGU------ACGU- -5'
18959 3' -55.4 NC_004683.1 + 24585 0.66 0.74116
Target:  5'- gGCGGcuaccuCGGcCucauggGAGGCGACCcgGCAu -3'
miRNA:   3'- gCGCUuu----GCCaG------CUCCGCUGGuaCGU- -5'
18959 3' -55.4 NC_004683.1 + 24787 0.71 0.453703
Target:  5'- gGCGuuGCGGUCGcGGCGgcgcgcgGCCAUGg- -3'
miRNA:   3'- gCGCuuUGCCAGCuCCGC-------UGGUACgu -5'
18959 3' -55.4 NC_004683.1 + 25566 0.68 0.622821
Target:  5'- gGCc--GCGGUCGGcaacggcacGGCGGCCGUcGCAg -3'
miRNA:   3'- gCGcuuUGCCAGCU---------CCGCUGGUA-CGU- -5'
18959 3' -55.4 NC_004683.1 + 26235 0.73 0.33784
Target:  5'- aCGCGAAGaGGUCGAGcGCGACaaucUGCu -3'
miRNA:   3'- -GCGCUUUgCCAGCUC-CGCUGgu--ACGu -5'
18959 3' -55.4 NC_004683.1 + 27022 0.66 0.730723
Target:  5'- uCGCGGguGACGGUCGcGGUGuaguucauCCGaGCAa -3'
miRNA:   3'- -GCGCU--UUGCCAGCuCCGCu-------GGUaCGU- -5'
18959 3' -55.4 NC_004683.1 + 31649 0.7 0.464557
Target:  5'- uGCGGcccuGAUGGUCGGGuaucacgccuGCGAgCAUGCAg -3'
miRNA:   3'- gCGCU----UUGCCAGCUC----------CGCUgGUACGU- -5'
18959 3' -55.4 NC_004683.1 + 32692 0.68 0.601016
Target:  5'- gGCGAAGCGuaCGAGGCGAgCG-GCu -3'
miRNA:   3'- gCGCUUUGCcaGCUCCGCUgGUaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.