miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18959 5' -59.5 NC_004683.1 + 51369 1.08 0.000547
Target:  5'- aGAUGGCCGCCAUCCUCGACGACCGCGu -3'
miRNA:   3'- -CUACCGGCGGUAGGAGCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 1658 0.78 0.082255
Target:  5'- cAUGGCgGCCGUgcgguuggggCCUCGACGAUCGCa -3'
miRNA:   3'- cUACCGgCGGUA----------GGAGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 33934 0.78 0.084561
Target:  5'- uGAUGGCCugcgGUgGUCC-CGGCGACCGCGc -3'
miRNA:   3'- -CUACCGG----CGgUAGGaGCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 25650 0.78 0.089359
Target:  5'- --cGGCCGCCGUgCCgUUGcCGACCGCGg -3'
miRNA:   3'- cuaCCGGCGGUA-GG-AGCuGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 42597 0.77 0.09974
Target:  5'- --gGGCCgGUCGUCCggcugggguggUCGGCGACCGCGa -3'
miRNA:   3'- cuaCCGG-CGGUAGG-----------AGCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 48844 0.77 0.09974
Target:  5'- -cUGGCCGCgaa-CUCGACGGCCGCa -3'
miRNA:   3'- cuACCGGCGguagGAGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 5482 0.76 0.114319
Target:  5'- uGUGGCaCGgCguGUCCUCGGCGGCCGUGc -3'
miRNA:   3'- cUACCG-GCgG--UAGGAGCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 18215 0.76 0.122999
Target:  5'- --cGGCCGCCAcggcgugcgguaggUgCCggCGGCGACCGCGa -3'
miRNA:   3'- cuaCCGGCGGU--------------A-GGa-GCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 49591 0.75 0.145675
Target:  5'- aGUGGCCG-CAUCCUCGuCGGCCaCGa -3'
miRNA:   3'- cUACCGGCgGUAGGAGCuGCUGGcGC- -5'
18959 5' -59.5 NC_004683.1 + 1230 0.75 0.149608
Target:  5'- --gGGgCGCCAacUCCUCGGacCGGCCGCGc -3'
miRNA:   3'- cuaCCgGCGGU--AGGAGCU--GCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 44188 0.74 0.153638
Target:  5'- --cGGCucagCGCCGgucaCCUCGACGAUCGCGu -3'
miRNA:   3'- cuaCCG----GCGGUa---GGAGCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 8606 0.74 0.159444
Target:  5'- cGGUGGCCGCCcugcagucgGUUgUCGACGgucguguagccaccaGCCGCGg -3'
miRNA:   3'- -CUACCGGCGG---------UAGgAGCUGC---------------UGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 5994 0.74 0.161993
Target:  5'- cGAUGGaCGCCAacuggaacaCCUCGGCGAgCGCGg -3'
miRNA:   3'- -CUACCgGCGGUa--------GGAGCUGCUgGCGC- -5'
18959 5' -59.5 NC_004683.1 + 47558 0.74 0.166322
Target:  5'- cGUGGUCGCCgaauggggcGUCCccugCGACGGCUGCGu -3'
miRNA:   3'- cUACCGGCGG---------UAGGa---GCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 55812 0.73 0.189557
Target:  5'- --aGGgCGCCAUgCUCGGCGACaugGCGa -3'
miRNA:   3'- cuaCCgGCGGUAgGAGCUGCUGg--CGC- -5'
18959 5' -59.5 NC_004683.1 + 52215 0.73 0.194534
Target:  5'- --aGGCCGUCGUcggucggguccgCCUCGGCGACC-CGg -3'
miRNA:   3'- cuaCCGGCGGUA------------GGAGCUGCUGGcGC- -5'
18959 5' -59.5 NC_004683.1 + 22037 0.73 0.204832
Target:  5'- -cUGGCCGgUGaaCUCGGCGGCCGCa -3'
miRNA:   3'- cuACCGGCgGUagGAGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 52612 0.72 0.210155
Target:  5'- uGUGGCauuccuugGCCG-CCUCGuCGGCCGCGa -3'
miRNA:   3'- cUACCGg-------CGGUaGGAGCuGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 30723 0.72 0.236793
Target:  5'- cGAUGGCUGCacgCUcaucgaguagcccaUCGACGGCCGCu -3'
miRNA:   3'- -CUACCGGCGguaGG--------------AGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 41291 0.72 0.238586
Target:  5'- -uUGGCgG-CGUCCUCGGCGgccuucGCCGCGu -3'
miRNA:   3'- cuACCGgCgGUAGGAGCUGC------UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.