miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18959 5' -59.5 NC_004683.1 + 363 0.66 0.506938
Target:  5'- --cGGCCGCgGucagcUCCUUGACcACCGUc -3'
miRNA:   3'- cuaCCGGCGgU-----AGGAGCUGcUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 976 0.68 0.419381
Target:  5'- uGGUGGCCGUggcuugaccggcaCAaggugaUCCUCGACGAgggguUCGCGc -3'
miRNA:   3'- -CUACCGGCG-------------GU------AGGAGCUGCU-----GGCGC- -5'
18959 5' -59.5 NC_004683.1 + 1230 0.75 0.149608
Target:  5'- --gGGgCGCCAacUCCUCGGacCGGCCGCGc -3'
miRNA:   3'- cuaCCgGCGGU--AGGAGCU--GCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 1658 0.78 0.082255
Target:  5'- cAUGGCgGCCGUgcgguuggggCCUCGACGAUCGCa -3'
miRNA:   3'- cUACCGgCGGUA----------GGAGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 2756 0.67 0.457745
Target:  5'- --cGGCCGCggCGagCUCGGCGGCgGCc -3'
miRNA:   3'- cuaCCGGCG--GUagGAGCUGCUGgCGc -5'
18959 5' -59.5 NC_004683.1 + 2839 0.72 0.238586
Target:  5'- -uUGGCCGCCG-CCgagcUCGccGCGGCCGCc -3'
miRNA:   3'- cuACCGGCGGUaGG----AGC--UGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 3740 0.66 0.517051
Target:  5'- --cGGCC-UCAcCCUCGACGGCuacggCGCGg -3'
miRNA:   3'- cuaCCGGcGGUaGGAGCUGCUG-----GCGC- -5'
18959 5' -59.5 NC_004683.1 + 3752 0.66 0.516036
Target:  5'- --gGGCCuGCCGcacacucUCCagCGGCGGCCGgGc -3'
miRNA:   3'- cuaCCGG-CGGU-------AGGa-GCUGCUGGCgC- -5'
18959 5' -59.5 NC_004683.1 + 3801 0.67 0.457745
Target:  5'- --aGGCCGucguuuggcucaCCGUCCUCGcCGGCauCGCGc -3'
miRNA:   3'- cuaCCGGC------------GGUAGGAGCuGCUG--GCGC- -5'
18959 5' -59.5 NC_004683.1 + 3951 0.7 0.29778
Target:  5'- gGGUGGCgGCCGUggucgaacugcaCCUugggCGGCGACuCGCGg -3'
miRNA:   3'- -CUACCGgCGGUA------------GGA----GCUGCUG-GCGC- -5'
18959 5' -59.5 NC_004683.1 + 5050 0.7 0.305018
Target:  5'- --cGGCCGCCcugcgaggaaccggCCUCGACGcgcaugcGCCGCu -3'
miRNA:   3'- cuaCCGGCGGua------------GGAGCUGC-------UGGCGc -5'
18959 5' -59.5 NC_004683.1 + 5393 0.68 0.384756
Target:  5'- uGAUGGCgCGCUucUCCUCuucgguGAgGAUCGCGg -3'
miRNA:   3'- -CUACCG-GCGGu-AGGAG------CUgCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 5482 0.76 0.114319
Target:  5'- uGUGGCaCGgCguGUCCUCGGCGGCCGUGc -3'
miRNA:   3'- cUACCG-GCgG--UAGGAGCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 5994 0.74 0.161993
Target:  5'- cGAUGGaCGCCAacuggaacaCCUCGGCGAgCGCGg -3'
miRNA:   3'- -CUACCgGCGGUa--------GGAGCUGCUgGCGC- -5'
18959 5' -59.5 NC_004683.1 + 6553 0.66 0.496909
Target:  5'- --gGcGCUGgCGUCCUCGACGcuGgCGCGa -3'
miRNA:   3'- cuaC-CGGCgGUAGGAGCUGC--UgGCGC- -5'
18959 5' -59.5 NC_004683.1 + 6650 0.7 0.31239
Target:  5'- --aGGCUGCCAUCgaCGccguGCuGGCCGCGg -3'
miRNA:   3'- cuaCCGGCGGUAGgaGC----UG-CUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 6717 0.7 0.310165
Target:  5'- cGAUGGCaGCCugagCCUCGGuguugucggcgaacUGGCCGCGc -3'
miRNA:   3'- -CUACCGgCGGua--GGAGCU--------------GCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 7203 0.7 0.283705
Target:  5'- -cUGGCCGCCGaacUCUUCGcucaugGCGACgGCa -3'
miRNA:   3'- cuACCGGCGGU---AGGAGC------UGCUGgCGc -5'
18959 5' -59.5 NC_004683.1 + 8606 0.74 0.159444
Target:  5'- cGGUGGCCGCCcugcagucgGUUgUCGACGgucguguagccaccaGCCGCGg -3'
miRNA:   3'- -CUACCGGCGG---------UAGgAGCUGC---------------UGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 8720 0.66 0.526221
Target:  5'- ---aGCUGcCCAUCCUgggcgagCGGCGACCaGCGa -3'
miRNA:   3'- cuacCGGC-GGUAGGA-------GCUGCUGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.