miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18959 5' -59.5 NC_004683.1 + 24701 0.69 0.343222
Target:  5'- cAUGGCCGCgCG-CCgCcGCGACCGCa -3'
miRNA:   3'- cUACCGGCG-GUaGGaGcUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 19227 0.7 0.305018
Target:  5'- uGGUGGCCGCCG-CCgggUCGAacgcgGugCGCGu -3'
miRNA:   3'- -CUACCGGCGGUaGG---AGCUg----CugGCGC- -5'
18959 5' -59.5 NC_004683.1 + 10217 0.7 0.305018
Target:  5'- --aGGCCGCCGaagaagaguUCC---ACGACCGCGa -3'
miRNA:   3'- cuaCCGGCGGU---------AGGagcUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 46580 0.7 0.305018
Target:  5'- -cUGGCUGCCGcugcuggugCCggUCGAgGGCCGCGa -3'
miRNA:   3'- cuACCGGCGGUa--------GG--AGCUgCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 24916 0.7 0.311647
Target:  5'- uGUGGCUGCUgcggcugAUCaccaacgUGACGACCGCGg -3'
miRNA:   3'- cUACCGGCGG-------UAGga-----GCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 6650 0.7 0.31239
Target:  5'- --aGGCUGCCAUCgaCGccguGCuGGCCGCGg -3'
miRNA:   3'- cuaCCGGCGGUAGgaGC----UG-CUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 9458 0.69 0.335313
Target:  5'- --aGGUCuaCAaCCUCGGCGACgGCGa -3'
miRNA:   3'- cuaCCGGcgGUaGGAGCUGCUGgCGC- -5'
18959 5' -59.5 NC_004683.1 + 43775 0.69 0.335313
Target:  5'- -cUGGCauCGCUAagcagucCCUCGACGACUGCa -3'
miRNA:   3'- cuACCG--GCGGUa------GGAGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 51308 0.69 0.335313
Target:  5'- --gGGCCGCCGaugaaCCUCaACGccaGCCGCGa -3'
miRNA:   3'- cuaCCGGCGGUa----GGAGcUGC---UGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 35290 0.7 0.29778
Target:  5'- ---cGUCGCCA-CCUUGGCGAUUGCGg -3'
miRNA:   3'- cuacCGGCGGUaGGAGCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 30723 0.72 0.236793
Target:  5'- cGAUGGCUGCacgCUcaucgaguagcccaUCGACGGCCGCu -3'
miRNA:   3'- -CUACCGGCGguaGG--------------AGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 52215 0.73 0.194534
Target:  5'- --aGGCCGUCGUcggucggguccgCCUCGGCGACC-CGg -3'
miRNA:   3'- cuaCCGGCGGUA------------GGAGCUGCUGGcGC- -5'
18959 5' -59.5 NC_004683.1 + 1658 0.78 0.082255
Target:  5'- cAUGGCgGCCGUgcgguuggggCCUCGACGAUCGCa -3'
miRNA:   3'- cUACCGgCGGUA----------GGAGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 48844 0.77 0.09974
Target:  5'- -cUGGCCGCgaa-CUCGACGGCCGCa -3'
miRNA:   3'- cuACCGGCGguagGAGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 42597 0.77 0.09974
Target:  5'- --gGGCCgGUCGUCCggcugggguggUCGGCGACCGCGa -3'
miRNA:   3'- cuaCCGG-CGGUAGG-----------AGCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 5482 0.76 0.114319
Target:  5'- uGUGGCaCGgCguGUCCUCGGCGGCCGUGc -3'
miRNA:   3'- cUACCG-GCgG--UAGGAGCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 49591 0.75 0.145675
Target:  5'- aGUGGCCG-CAUCCUCGuCGGCCaCGa -3'
miRNA:   3'- cUACCGGCgGUAGGAGCuGCUGGcGC- -5'
18959 5' -59.5 NC_004683.1 + 5994 0.74 0.161993
Target:  5'- cGAUGGaCGCCAacuggaacaCCUCGGCGAgCGCGg -3'
miRNA:   3'- -CUACCgGCGGUa--------GGAGCUGCUgGCGC- -5'
18959 5' -59.5 NC_004683.1 + 47558 0.74 0.166322
Target:  5'- cGUGGUCGCCgaauggggcGUCCccugCGACGGCUGCGu -3'
miRNA:   3'- cUACCGGCGG---------UAGGa---GCUGCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 55812 0.73 0.189557
Target:  5'- --aGGgCGCCAUgCUCGGCGACaugGCGa -3'
miRNA:   3'- cuaCCgGCGGUAgGAGCUGCUGg--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.