miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18961 5' -58.9 NC_004683.1 + 51952 1.11 0.000332
Target:  5'- gCACGCCCGCAGUGGAUCCGCUGACGCg -3'
miRNA:   3'- -GUGCGGGCGUCACCUAGGCGACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 51145 0.75 0.157934
Target:  5'- --gGCCCGCAGauccacaugcgGGAaCUGCUGGCGCa -3'
miRNA:   3'- gugCGGGCGUCa----------CCUaGGCGACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 39612 0.75 0.162192
Target:  5'- gGCGCCCGUuccggGGUGGGcgCCGCcgggGugGCg -3'
miRNA:   3'- gUGCGGGCG-----UCACCUa-GGCGa---CugCG- -5'
18961 5' -58.9 NC_004683.1 + 40994 0.72 0.227579
Target:  5'- gGCGCCCG-GGUcGGAUCCGggGAUGUa -3'
miRNA:   3'- gUGCGGGCgUCA-CCUAGGCgaCUGCG- -5'
18961 5' -58.9 NC_004683.1 + 44526 0.71 0.258159
Target:  5'- gGCGCCggCGCGGUGGcg-CGCUGcGCGCg -3'
miRNA:   3'- gUGCGG--GCGUCACCuagGCGAC-UGCG- -5'
18961 5' -58.9 NC_004683.1 + 39167 0.71 0.258159
Target:  5'- gCGCGCUCGUAuUGGucagCCGCgaGACGCa -3'
miRNA:   3'- -GUGCGGGCGUcACCua--GGCGa-CUGCG- -5'
18961 5' -58.9 NC_004683.1 + 2468 0.7 0.298466
Target:  5'- aCGgGCCgGcCAGUgucugcuGGAUCCGCggGACGCc -3'
miRNA:   3'- -GUgCGGgC-GUCA-------CCUAGGCGa-CUGCG- -5'
18961 5' -58.9 NC_004683.1 + 43976 0.7 0.305763
Target:  5'- gCGCGCCucccggaucgacgCGCAGUGGGUCgGCgcgaacGACGa -3'
miRNA:   3'- -GUGCGG-------------GCGUCACCUAGgCGa-----CUGCg -5'
18961 5' -58.9 NC_004683.1 + 12489 0.7 0.306499
Target:  5'- gCugGCgCGCGGUGGccagCUGCUGA-GCg -3'
miRNA:   3'- -GugCGgGCGUCACCua--GGCGACUgCG- -5'
18961 5' -58.9 NC_004683.1 + 40226 0.7 0.321528
Target:  5'- aCAC-CCCGCGGUGGAUCgcaUGCagauUGGCGa -3'
miRNA:   3'- -GUGcGGGCGUCACCUAG---GCG----ACUGCg -5'
18961 5' -58.9 NC_004683.1 + 44660 0.7 0.34028
Target:  5'- aGCGCCCcggcgaaccacgacGCGGUGGuugAUCUGCagguggugcagucaUGACGCg -3'
miRNA:   3'- gUGCGGG--------------CGUCACC---UAGGCG--------------ACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 24892 0.69 0.383569
Target:  5'- gCAuCGCCCGCAagacccggCCGCUGugGCu -3'
miRNA:   3'- -GU-GCGGGCGUcaccua--GGCGACugCG- -5'
18961 5' -58.9 NC_004683.1 + 51049 0.68 0.402058
Target:  5'- cCGCGaugcgccagcaguuCCCGCAuGUGGAUCUGCgGGCcgaGCa -3'
miRNA:   3'- -GUGC--------------GGGCGU-CACCUAGGCGaCUG---CG- -5'
18961 5' -58.9 NC_004683.1 + 51639 0.68 0.413783
Target:  5'- --aGCCCGCGGUcgcgcugccgGGGUUCGUUgGugGCc -3'
miRNA:   3'- gugCGGGCGUCA----------CCUAGGCGA-CugCG- -5'
18961 5' -58.9 NC_004683.1 + 42529 0.68 0.413783
Target:  5'- gUACGagaCCGacgAGUGGcgCCGCgcGACGCa -3'
miRNA:   3'- -GUGCg--GGCg--UCACCuaGGCGa-CUGCG- -5'
18961 5' -58.9 NC_004683.1 + 26798 0.68 0.413783
Target:  5'- -uUGUCgCGCAG-GGcuAUCCGCUGGCGg -3'
miRNA:   3'- guGCGG-GCGUCaCC--UAGGCGACUGCg -5'
18961 5' -58.9 NC_004683.1 + 42132 0.68 0.422945
Target:  5'- -cCGCCUGCccguGUGcccGGUCUGCUGGCGg -3'
miRNA:   3'- guGCGGGCGu---CAC---CUAGGCGACUGCg -5'
18961 5' -58.9 NC_004683.1 + 21300 0.68 0.438794
Target:  5'- aACGCCCGguGUGu-UCgGCUcggaccucggacugGGCGCg -3'
miRNA:   3'- gUGCGGGCguCACcuAGgCGA--------------CUGCG- -5'
18961 5' -58.9 NC_004683.1 + 33973 0.68 0.441627
Target:  5'- -cCGCUCGCGGUGGA-CCaGCUcGugGg -3'
miRNA:   3'- guGCGGGCGUCACCUaGG-CGA-CugCg -5'
18961 5' -58.9 NC_004683.1 + 10602 0.68 0.441627
Target:  5'- gCGCGCCgCGCugaGGUGcgggcGGUCCGC-GAUGCc -3'
miRNA:   3'- -GUGCGG-GCG---UCAC-----CUAGGCGaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.