miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18961 5' -58.9 NC_004683.1 + 296 0.68 0.441627
Target:  5'- gGCGCUCGgAGUgGGAUCCG-UGACc- -3'
miRNA:   3'- gUGCGGGCgUCA-CCUAGGCgACUGcg -5'
18961 5' -58.9 NC_004683.1 + 2468 0.7 0.298466
Target:  5'- aCGgGCCgGcCAGUgucugcuGGAUCCGCggGACGCc -3'
miRNA:   3'- -GUgCGGgC-GUCA-------CCUAGGCGa-CUGCG- -5'
18961 5' -58.9 NC_004683.1 + 4427 0.67 0.451141
Target:  5'- -uCGCCCGCAGUugaacacccGGccgaGUCCGaC-GACGCg -3'
miRNA:   3'- guGCGGGCGUCA---------CC----UAGGC-GaCUGCG- -5'
18961 5' -58.9 NC_004683.1 + 5501 0.66 0.551695
Target:  5'- gGCgGCCgUGCAGUGGAgCUGg-GACGCc -3'
miRNA:   3'- gUG-CGG-GCGUCACCUaGGCgaCUGCG- -5'
18961 5' -58.9 NC_004683.1 + 6086 0.66 0.551695
Target:  5'- cCGCGCUCGCcgaGGUGu-UCCaGUUGGCGUc -3'
miRNA:   3'- -GUGCGGGCG---UCACcuAGG-CGACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 10602 0.68 0.441627
Target:  5'- gCGCGCCgCGCugaGGUGcgggcGGUCCGC-GAUGCc -3'
miRNA:   3'- -GUGCGG-GCG---UCAC-----CUAGGCGaCUGCG- -5'
18961 5' -58.9 NC_004683.1 + 12030 0.67 0.451141
Target:  5'- gCGCGCCCGCGcgGGGcuaCCGCcgGAgGCu -3'
miRNA:   3'- -GUGCGGGCGUcaCCUa--GGCGa-CUgCG- -5'
18961 5' -58.9 NC_004683.1 + 12050 0.66 0.545434
Target:  5'- aGC-CCCGguGUGGGcagcggcgguagccCCGCgcgGGCGCg -3'
miRNA:   3'- gUGcGGGCguCACCUa-------------GGCGa--CUGCG- -5'
18961 5' -58.9 NC_004683.1 + 12224 0.67 0.451141
Target:  5'- cCACGCCCGCcggGGcGGGagCGCccGGCGUg -3'
miRNA:   3'- -GUGCGGGCG---UCaCCUagGCGa-CUGCG- -5'
18961 5' -58.9 NC_004683.1 + 12489 0.7 0.306499
Target:  5'- gCugGCgCGCGGUGGccagCUGCUGA-GCg -3'
miRNA:   3'- -GugCGgGCGUCACCua--GGCGACUgCG- -5'
18961 5' -58.9 NC_004683.1 + 13323 0.66 0.551695
Target:  5'- gACGCCgaUGCGGUcgacGGGUacaCGgUGACGCu -3'
miRNA:   3'- gUGCGG--GCGUCA----CCUAg--GCgACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 17625 0.66 0.55065
Target:  5'- aACGCCuCGaacagucCGGUGauGAaCCGCUGAUGCu -3'
miRNA:   3'- gUGCGG-GC-------GUCAC--CUaGGCGACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 18875 0.67 0.480338
Target:  5'- gGCGCCCGacuucGAUCCGCagGAgGCg -3'
miRNA:   3'- gUGCGGGCgucacCUAGGCGa-CUgCG- -5'
18961 5' -58.9 NC_004683.1 + 19625 0.66 0.510426
Target:  5'- gACGagaUCG-AGUGGAUCCGCgauCGCg -3'
miRNA:   3'- gUGCg--GGCgUCACCUAGGCGacuGCG- -5'
18961 5' -58.9 NC_004683.1 + 20199 0.66 0.526792
Target:  5'- aACGaCCgGCGGggucaccucguucGGAU-CGCUGGCGCa -3'
miRNA:   3'- gUGC-GGgCGUCa------------CCUAgGCGACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 21300 0.68 0.438794
Target:  5'- aACGCCCGguGUGu-UCgGCUcggaccucggacugGGCGCg -3'
miRNA:   3'- gUGCGGGCguCACcuAGgCGA--------------CUGCG- -5'
18961 5' -58.9 NC_004683.1 + 21812 0.66 0.541272
Target:  5'- -cUGCCCGCGGgcUGGGUUgaauccggcggCGCUGccaGCGCc -3'
miRNA:   3'- guGCGGGCGUC--ACCUAG-----------GCGAC---UGCG- -5'
18961 5' -58.9 NC_004683.1 + 22623 0.67 0.500306
Target:  5'- cCACGCCCacCAGUuGAUUCGg-GGCGCa -3'
miRNA:   3'- -GUGCGGGc-GUCAcCUAGGCgaCUGCG- -5'
18961 5' -58.9 NC_004683.1 + 23393 0.66 0.562179
Target:  5'- aACGCCCGCGGcGGcaCCGaCgagGGCGg -3'
miRNA:   3'- gUGCGGGCGUCaCCuaGGC-Ga--CUGCg -5'
18961 5' -58.9 NC_004683.1 + 24238 0.66 0.541272
Target:  5'- uCACGCacuggcaGCGGUGGGcCCGCgccuACGCc -3'
miRNA:   3'- -GUGCGgg-----CGUCACCUaGGCGac--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.