Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18961 | 5' | -58.9 | NC_004683.1 | + | 39845 | 0.67 | 0.500306 |
Target: 5'- uGCGCUCGCcgAGaGGuugCUGCUGACGa -3' miRNA: 3'- gUGCGGGCG--UCaCCua-GGCGACUGCg -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 33973 | 0.68 | 0.441627 |
Target: 5'- -cCGCUCGCGGUGGA-CCaGCUcGugGg -3' miRNA: 3'- guGCGGGCGUCACCUaGG-CGA-CugCg -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 12030 | 0.67 | 0.451141 |
Target: 5'- gCGCGCCCGCGcgGGGcuaCCGCcgGAgGCu -3' miRNA: 3'- -GUGCGGGCGUcaCCUa--GGCGa-CUgCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 12224 | 0.67 | 0.451141 |
Target: 5'- cCACGCCCGCcggGGcGGGagCGCccGGCGUg -3' miRNA: 3'- -GUGCGGGCG---UCaCCUagGCGa-CUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 4427 | 0.67 | 0.451141 |
Target: 5'- -uCGCCCGCAGUugaacacccGGccgaGUCCGaC-GACGCg -3' miRNA: 3'- guGCGGGCGUCA---------CC----UAGGC-GaCUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 50008 | 0.67 | 0.460767 |
Target: 5'- gCAC-CCUGCAGgaccGGAUCCGUcaaaucgaacgGGCGCu -3' miRNA: 3'- -GUGcGGGCGUCa---CCUAGGCGa----------CUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 18875 | 0.67 | 0.480338 |
Target: 5'- gGCGCCCGacuucGAUCCGCagGAgGCg -3' miRNA: 3'- gUGCGGGCgucacCUAGGCGa-CUgCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 45039 | 0.67 | 0.480338 |
Target: 5'- aCGCGCUgGCcaaGGUGcacaCGCUGGCGCu -3' miRNA: 3'- -GUGCGGgCG---UCACcuagGCGACUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 46921 | 0.67 | 0.490275 |
Target: 5'- gGCGCUgccgacgugcaCGaCGGUGGAgcggcacgcgCUGCUGAUGCg -3' miRNA: 3'- gUGCGG-----------GC-GUCACCUa---------GGCGACUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 10602 | 0.68 | 0.441627 |
Target: 5'- gCGCGCCgCGCugaGGUGcgggcGGUCCGC-GAUGCc -3' miRNA: 3'- -GUGCGG-GCG---UCAC-----CUAGGCGaCUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 21300 | 0.68 | 0.438794 |
Target: 5'- aACGCCCGguGUGu-UCgGCUcggaccucggacugGGCGCg -3' miRNA: 3'- gUGCGGGCguCACcuAGgCGA--------------CUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 42132 | 0.68 | 0.422945 |
Target: 5'- -cCGCCUGCccguGUGcccGGUCUGCUGGCGg -3' miRNA: 3'- guGCGGGCGu---CAC---CUAGGCGACUGCg -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 39612 | 0.75 | 0.162192 |
Target: 5'- gGCGCCCGUuccggGGUGGGcgCCGCcgggGugGCg -3' miRNA: 3'- gUGCGGGCG-----UCACCUa-GGCGa---CugCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 43976 | 0.7 | 0.305763 |
Target: 5'- gCGCGCCucccggaucgacgCGCAGUGGGUCgGCgcgaacGACGa -3' miRNA: 3'- -GUGCGG-------------GCGUCACCUAGgCGa-----CUGCg -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 44660 | 0.7 | 0.34028 |
Target: 5'- aGCGCCCcggcgaaccacgacGCGGUGGuugAUCUGCagguggugcagucaUGACGCg -3' miRNA: 3'- gUGCGGG--------------CGUCACC---UAGGCG--------------ACUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 24892 | 0.69 | 0.383569 |
Target: 5'- gCAuCGCCCGCAagacccggCCGCUGugGCu -3' miRNA: 3'- -GU-GCGGGCGUcaccua--GGCGACugCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 51049 | 0.68 | 0.402058 |
Target: 5'- cCGCGaugcgccagcaguuCCCGCAuGUGGAUCUGCgGGCcgaGCa -3' miRNA: 3'- -GUGC--------------GGGCGU-CACCUAGGCGaCUG---CG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 26798 | 0.68 | 0.413783 |
Target: 5'- -uUGUCgCGCAG-GGcuAUCCGCUGGCGg -3' miRNA: 3'- guGCGG-GCGUCaCC--UAGGCGACUGCg -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 42529 | 0.68 | 0.413783 |
Target: 5'- gUACGagaCCGacgAGUGGcgCCGCgcGACGCa -3' miRNA: 3'- -GUGCg--GGCg--UCACCuaGGCGa-CUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 51639 | 0.68 | 0.413783 |
Target: 5'- --aGCCCGCGGUcgcgcugccgGGGUUCGUUgGugGCc -3' miRNA: 3'- gugCGGGCGUCA----------CCUAGGCGA-CugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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