miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 3' -66.6 NC_004683.1 + 52240 1.07 0.000124
Target:  5'- cGGCGACCCGGGCCGGCGCGGCACCAAg -3'
miRNA:   3'- -CCGCUGGGCCCGGCCGCGCCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 20406 0.82 0.01246
Target:  5'- cGGCGcACCCGGGgCGGCcaacgGCGGCACCGg -3'
miRNA:   3'- -CCGC-UGGGCCCgGCCG-----CGCCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 6203 0.79 0.02164
Target:  5'- cGCGACCCguuGGGCCGGCGguUGGUGCCGAa -3'
miRNA:   3'- cCGCUGGG---CCCGGCCGC--GCCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 46549 0.76 0.041771
Target:  5'- uGGCgcgGAUCCGGGCCGGCaucgaGCGGUACUg- -3'
miRNA:   3'- -CCG---CUGGGCCCGGCCG-----CGCCGUGGuu -5'
18962 3' -66.6 NC_004683.1 + 17764 0.75 0.045325
Target:  5'- gGGCGACCCGGGCC--CGUGG-ACCGAg -3'
miRNA:   3'- -CCGCUGGGCCCGGccGCGCCgUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 6567 0.74 0.057847
Target:  5'- aGGUGACCCGGcUCGGCGCuGGCGuCCu- -3'
miRNA:   3'- -CCGCUGGGCCcGGCCGCG-CCGU-GGuu -5'
18962 3' -66.6 NC_004683.1 + 8623 0.73 0.064436
Target:  5'- cGGCGAUCa-GGCCGGUGCGGUgGCCGc -3'
miRNA:   3'- -CCGCUGGgcCCGGCCGCGCCG-UGGUu -5'
18962 3' -66.6 NC_004683.1 + 21627 0.73 0.067814
Target:  5'- gGGCGGCaaCUGGGCCGucuacacccuggaGCGCGGCGuCCAu -3'
miRNA:   3'- -CCGCUG--GGCCCGGC-------------CGCGCCGU-GGUu -5'
18962 3' -66.6 NC_004683.1 + 44375 0.73 0.069847
Target:  5'- cGGUG-CCCGGGCgaucguCGGCGCGGauCGCCGc -3'
miRNA:   3'- -CCGCuGGGCCCG------GCCGCGCC--GUGGUu -5'
18962 3' -66.6 NC_004683.1 + 47394 0.73 0.071553
Target:  5'- cGGCGACCugcucgaccaucgCGGGCUGGCuCGGCAgCGu -3'
miRNA:   3'- -CCGCUGG-------------GCCCGGCCGcGCCGUgGUu -5'
18962 3' -66.6 NC_004683.1 + 12807 0.72 0.079848
Target:  5'- uGGCGgauACCCGGGCgaugCGGCGCuGCugGCCAAc -3'
miRNA:   3'- -CCGC---UGGGCCCG----GCCGCGcCG--UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 46136 0.72 0.081789
Target:  5'- cGGCGaACCgGGGCacgucccacaucgUGGCGCGGgACCGc -3'
miRNA:   3'- -CCGC-UGGgCCCG-------------GCCGCGCCgUGGUu -5'
18962 3' -66.6 NC_004683.1 + 51421 0.72 0.086263
Target:  5'- cGCGGCCUGGGCUGaGCagaucgaGCGGCACa-- -3'
miRNA:   3'- cCGCUGGGCCCGGC-CG-------CGCCGUGguu -5'
18962 3' -66.6 NC_004683.1 + 9278 0.72 0.086493
Target:  5'- gGGCGcauGCCCGGGCUGGaCGUGcGCcCCGc -3'
miRNA:   3'- -CCGC---UGGGCCCGGCC-GCGC-CGuGGUu -5'
18962 3' -66.6 NC_004683.1 + 16579 0.71 0.088822
Target:  5'- cGGUGACCCgucgaaaaacGGGuuGGUGCG-CACCAc -3'
miRNA:   3'- -CCGCUGGG----------CCCggCCGCGCcGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 52671 0.71 0.096173
Target:  5'- gGGUGGCUCGGGCCGGuUGaccacGCGCCGGa -3'
miRNA:   3'- -CCGCUGGGCCCGGCC-GCgc---CGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 30868 0.71 0.096173
Target:  5'- cGGCGuuCCGGG-CGGCGUGcGCAgCCGAc -3'
miRNA:   3'- -CCGCugGGCCCgGCCGCGC-CGU-GGUU- -5'
18962 3' -66.6 NC_004683.1 + 23719 0.71 0.096173
Target:  5'- cGGCGGCaCCGGcGgCGGCaccacccCGGCGCCGAc -3'
miRNA:   3'- -CCGCUG-GGCC-CgGCCGc------GCCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 33065 0.71 0.098749
Target:  5'- gGGCGACCaaGGCUuGCGCGGCuucCCAu -3'
miRNA:   3'- -CCGCUGGgcCCGGcCGCGCCGu--GGUu -5'
18962 3' -66.6 NC_004683.1 + 48108 0.7 0.106872
Target:  5'- ---cGCCUGGGCCGGCGCcaccucaucGGCugCAGc -3'
miRNA:   3'- ccgcUGGGCCCGGCCGCG---------CCGugGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.