miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 3' -66.6 NC_004683.1 + 53689 0.68 0.153698
Target:  5'- cGCGACgCUGGGCaUGuGUGCGGCcCCAc -3'
miRNA:   3'- cCGCUG-GGCCCG-GC-CGCGCCGuGGUu -5'
18962 3' -66.6 NC_004683.1 + 12249 0.69 0.127991
Target:  5'- cGGCGugccgauGCCCGGcGCUGGUGgCGGCAUa-- -3'
miRNA:   3'- -CCGC-------UGGGCC-CGGCCGC-GCCGUGguu -5'
18962 3' -66.6 NC_004683.1 + 31895 0.69 0.128324
Target:  5'- cGuCGGCUCGGGCCGGUGCa--GCCAGc -3'
miRNA:   3'- cC-GCUGGGCCCGGCCGCGccgUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 927 0.69 0.129663
Target:  5'- aGGCGuGCCCGgauGGCCaGCGCGugaucuucaaggcgcGCACCAAc -3'
miRNA:   3'- -CCGC-UGGGC---CCGGcCGCGC---------------CGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 21567 0.69 0.138687
Target:  5'- gGGCGGCggCgGuGGCgGGCGCGGCAUgAu -3'
miRNA:   3'- -CCGCUG--GgC-CCGgCCGCGCCGUGgUu -5'
18962 3' -66.6 NC_004683.1 + 26126 0.69 0.142309
Target:  5'- cGGCGAUCCugucaucgGGuaucGCCGGCGCGGCGg--- -3'
miRNA:   3'- -CCGCUGGG--------CC----CGGCCGCGCCGUgguu -5'
18962 3' -66.6 NC_004683.1 + 14520 0.69 0.146017
Target:  5'- cGGCGACCUGGGCgagaacUGGCcGCuGUACUAc -3'
miRNA:   3'- -CCGCUGGGCCCG------GCCG-CGcCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 44287 0.69 0.146017
Target:  5'- cGGCGAUCCGcGCCGacgauCGCccgGGCACCGAc -3'
miRNA:   3'- -CCGCUGGGCcCGGCc----GCG---CCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 19830 0.68 0.153306
Target:  5'- cGCaGGCCaucuucgCGGGuuGGCGCGGUucaGCCAGc -3'
miRNA:   3'- cCG-CUGG-------GCCCggCCGCGCCG---UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 18898 0.7 0.121818
Target:  5'- aGGCGGCCCGGGaguuCGUGcGCACCGu -3'
miRNA:   3'- -CCGCUGGGCCCggccGCGC-CGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 51526 0.7 0.121501
Target:  5'- cGGCGACCUGauccaucacgcacGGCaGGCGCGcCGCCAGc -3'
miRNA:   3'- -CCGCUGGGC-------------CCGgCCGCGCcGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 33065 0.71 0.098749
Target:  5'- gGGCGACCaaGGCUuGCGCGGCuucCCAu -3'
miRNA:   3'- -CCGCUGGgcCCGGcCGCGCCGu--GGUu -5'
18962 3' -66.6 NC_004683.1 + 20406 0.82 0.01246
Target:  5'- cGGCGcACCCGGGgCGGCcaacgGCGGCACCGg -3'
miRNA:   3'- -CCGC-UGGGCCCgGCCG-----CGCCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 46549 0.76 0.041771
Target:  5'- uGGCgcgGAUCCGGGCCGGCaucgaGCGGUACUg- -3'
miRNA:   3'- -CCG---CUGGGCCCGGCCG-----CGCCGUGGuu -5'
18962 3' -66.6 NC_004683.1 + 17764 0.75 0.045325
Target:  5'- gGGCGACCCGGGCC--CGUGG-ACCGAg -3'
miRNA:   3'- -CCGCUGGGCCCGGccGCGCCgUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 21627 0.73 0.067814
Target:  5'- gGGCGGCaaCUGGGCCGucuacacccuggaGCGCGGCGuCCAu -3'
miRNA:   3'- -CCGCUG--GGCCCGGC-------------CGCGCCGU-GGUu -5'
18962 3' -66.6 NC_004683.1 + 12807 0.72 0.079848
Target:  5'- uGGCGgauACCCGGGCgaugCGGCGCuGCugGCCAAc -3'
miRNA:   3'- -CCGC---UGGGCCCG----GCCGCGcCG--UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 51421 0.72 0.086263
Target:  5'- cGCGGCCUGGGCUGaGCagaucgaGCGGCACa-- -3'
miRNA:   3'- cCGCUGGGCCCGGC-CG-------CGCCGUGguu -5'
18962 3' -66.6 NC_004683.1 + 9278 0.72 0.086493
Target:  5'- gGGCGcauGCCCGGGCUGGaCGUGcGCcCCGc -3'
miRNA:   3'- -CCGC---UGGGCCCGGCC-GCGC-CGuGGUu -5'
18962 3' -66.6 NC_004683.1 + 23719 0.71 0.096173
Target:  5'- cGGCGGCaCCGGcGgCGGCaccacccCGGCGCCGAc -3'
miRNA:   3'- -CCGCUG-GGCC-CgGCCGc------GCCGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.