miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 3' -66.6 NC_004683.1 + 861 0.66 0.223802
Target:  5'- aGGaCGGCCCcaccaauGGCguguuccgUGGCGCgGGCACCGAg -3'
miRNA:   3'- -CC-GCUGGGc------CCG--------GCCGCG-CCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 927 0.69 0.129663
Target:  5'- aGGCGuGCCCGgauGGCCaGCGCGugaucuucaaggcgcGCACCAAc -3'
miRNA:   3'- -CCGC-UGGGC---CCGGcCGCGC---------------CGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 1186 0.69 0.146017
Target:  5'- aGC-ACCuCGGaGUCGGCGUGGCAuCCGAc -3'
miRNA:   3'- cCGcUGG-GCC-CGGCCGCGCCGU-GGUU- -5'
18962 3' -66.6 NC_004683.1 + 1580 0.66 0.216783
Target:  5'- cGGCGGCCCGcGG-CGGCaacgucgccacauuGCcgGGCAUCAAc -3'
miRNA:   3'- -CCGCUGGGC-CCgGCCG--------------CG--CCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 1743 0.68 0.170168
Target:  5'- cGGCGACgaGGuGacaaaCGGCGCGGgCAUCAAc -3'
miRNA:   3'- -CCGCUGggCC-Cg----GCCGCGCC-GUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 3659 0.67 0.197829
Target:  5'- uGCGGCCCGGccGCCGcuggagaguGUGCGGCAggccCCGu -3'
miRNA:   3'- cCGCUGGGCC--CGGC---------CGCGCCGU----GGUu -5'
18962 3' -66.6 NC_004683.1 + 4488 0.66 0.212557
Target:  5'- gGGCGAUUCGGGagucucggccucaUCGGCGUGGgACUc- -3'
miRNA:   3'- -CCGCUGGGCCC-------------GGCCGCGCCgUGGuu -5'
18962 3' -66.6 NC_004683.1 + 6203 0.79 0.02164
Target:  5'- cGCGACCCguuGGGCCGGCGguUGGUGCCGAa -3'
miRNA:   3'- cCGCUGGG---CCCGGCCGC--GCCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 6567 0.74 0.057847
Target:  5'- aGGUGACCCGGcUCGGCGCuGGCGuCCu- -3'
miRNA:   3'- -CCGCUGGGCCcGGCCGCG-CCGU-GGuu -5'
18962 3' -66.6 NC_004683.1 + 6941 0.66 0.243077
Target:  5'- aGGCGGCCgacuggcggCGGGCgguggugcagcucguCGGCcgGCGGC-CCAGa -3'
miRNA:   3'- -CCGCUGG---------GCCCG---------------GCCG--CGCCGuGGUU- -5'
18962 3' -66.6 NC_004683.1 + 7177 0.66 0.223802
Target:  5'- gGGUGcGCCCGGGUgGG-GCGGacuuaagGCCAAg -3'
miRNA:   3'- -CCGC-UGGGCCCGgCCgCGCCg------UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 8623 0.73 0.064436
Target:  5'- cGGCGAUCa-GGCCGGUGCGGUgGCCGc -3'
miRNA:   3'- -CCGCUGGgcCCGGCCGCGCCG-UGGUu -5'
18962 3' -66.6 NC_004683.1 + 9225 0.68 0.161333
Target:  5'- cGGCGGuCCCGccugggacgcgcuGGCCGGCGaCGGC-UCGu -3'
miRNA:   3'- -CCGCU-GGGC-------------CCGGCCGC-GCCGuGGUu -5'
18962 3' -66.6 NC_004683.1 + 9278 0.72 0.086493
Target:  5'- gGGCGcauGCCCGGGCUGGaCGUGcGCcCCGc -3'
miRNA:   3'- -CCGC---UGGGCCCGGCC-GCGC-CGuGGUu -5'
18962 3' -66.6 NC_004683.1 + 10211 0.7 0.115317
Target:  5'- uGGgGugCCGGcguacuuGCUGGCGCGGUagGCCGc -3'
miRNA:   3'- -CCgCugGGCC-------CGGCCGCGCCG--UGGUu -5'
18962 3' -66.6 NC_004683.1 + 10494 0.66 0.229332
Target:  5'- cGCGAUgcugCGGGCCGGCuucGCGCCGAg -3'
miRNA:   3'- cCGCUGg---GCCCGGCCGcgcCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 10710 0.67 0.178531
Target:  5'- gGGCuGCgUGGGUcacugucugguauCGGCGCGGCggGCCAAg -3'
miRNA:   3'- -CCGcUGgGCCCG-------------GCCGCGCCG--UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 12057 0.67 0.192961
Target:  5'- gGGCGAcagcCCCGGuGUgGGCaGCGGCGgUAGc -3'
miRNA:   3'- -CCGCU----GGGCC-CGgCCG-CGCCGUgGUU- -5'
18962 3' -66.6 NC_004683.1 + 12142 0.69 0.125032
Target:  5'- gGGCGGCagGGGgUGGCGgGGgGCCAGc -3'
miRNA:   3'- -CCGCUGggCCCgGCCGCgCCgUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 12249 0.69 0.127991
Target:  5'- cGGCGugccgauGCCCGGcGCUGGUGgCGGCAUa-- -3'
miRNA:   3'- -CCGC-------UGGGCC-CGGCCGC-GCCGUGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.