miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 5' -54.3 NC_004683.1 + 52275 1.1 0.001249
Target:  5'- aGCUCGACGCCUACACCGGAACAGACGc -3'
miRNA:   3'- -CGAGCUGCGGAUGUGGCCUUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 25879 0.81 0.138667
Target:  5'- gGCUCGGCGUCgaguuCGCCGG-GCAGACGc -3'
miRNA:   3'- -CGAGCUGCGGau---GUGGCCuUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 39693 0.77 0.22493
Target:  5'- --gCGGCGCCcACcCCGGAACGGGCGc -3'
miRNA:   3'- cgaGCUGCGGaUGuGGCCUUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 24100 0.75 0.297616
Target:  5'- cGCUCGACGgguaggugaacCCg--GCCGGGGCGGGCGg -3'
miRNA:   3'- -CGAGCUGC-----------GGaugUGGCCUUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 3670 0.75 0.320368
Target:  5'- cGCUCGACGCCgACGC-GGAcacgcCGGGCGg -3'
miRNA:   3'- -CGAGCUGCGGaUGUGgCCUu----GUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 15048 0.74 0.369696
Target:  5'- cCUCGACGCCguugcgcauCACCuuGAACAGGCGc -3'
miRNA:   3'- cGAGCUGCGGau-------GUGGc-CUUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 54062 0.73 0.396237
Target:  5'- cGCUcCGACGCCaACGCCGGugUGGAgCGu -3'
miRNA:   3'- -CGA-GCUGCGGaUGUGGCCuuGUCU-GC- -5'
18962 5' -54.3 NC_004683.1 + 51059 0.73 0.405353
Target:  5'- cCUCGGCGCCUuggcggcggguGCgGCCGGAGCGcugugcgcGACGg -3'
miRNA:   3'- cGAGCUGCGGA-----------UG-UGGCCUUGU--------CUGC- -5'
18962 5' -54.3 NC_004683.1 + 52334 0.73 0.42209
Target:  5'- aGCUCGuGCGCCUuggugccGCGCCGGcccgggucgccgaGGCGGACc -3'
miRNA:   3'- -CGAGC-UGCGGA-------UGUGGCC-------------UUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 41036 0.72 0.452842
Target:  5'- cCUCGGCGCCUACcucGCCGGcgAGCuGAUc -3'
miRNA:   3'- cGAGCUGCGGAUG---UGGCC--UUGuCUGc -5'
18962 5' -54.3 NC_004683.1 + 40348 0.72 0.462701
Target:  5'- uCUCGACGCCUcgggccugaccgACGCCGGucucACuGAUGa -3'
miRNA:   3'- cGAGCUGCGGA------------UGUGGCCu---UGuCUGC- -5'
18962 5' -54.3 NC_004683.1 + 365 0.72 0.47267
Target:  5'- cCUCGACaGUCgACACCGGuGCGGGCc -3'
miRNA:   3'- cGAGCUG-CGGaUGUGGCCuUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 26024 0.71 0.49395
Target:  5'- cGCUCGACGCagauccugcacaccaUGCACCGGuuCcGGCGc -3'
miRNA:   3'- -CGAGCUGCGg--------------AUGUGGCCuuGuCUGC- -5'
18962 5' -54.3 NC_004683.1 + 10373 0.71 0.503204
Target:  5'- cGC-CGACGCggGCAagaaugCGGGACAGGCGu -3'
miRNA:   3'- -CGaGCUGCGgaUGUg-----GCCUUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 22713 0.71 0.503204
Target:  5'- gGUUCGACGCgCgucgGCACCGuaucAGCGGACa -3'
miRNA:   3'- -CGAGCUGCG-Ga---UGUGGCc---UUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 6558 0.71 0.524029
Target:  5'- gGCUCGGCGCUggcguccucgACGCUGGcGC-GACGa -3'
miRNA:   3'- -CGAGCUGCGGa---------UGUGGCCuUGuCUGC- -5'
18962 5' -54.3 NC_004683.1 + 37073 0.7 0.566588
Target:  5'- cGCUCGACGaUUUACGCCGaGAcgccgaguccgcGCAGgACGa -3'
miRNA:   3'- -CGAGCUGC-GGAUGUGGC-CU------------UGUC-UGC- -5'
18962 5' -54.3 NC_004683.1 + 39138 0.7 0.566588
Target:  5'- uGCUCGAgGCCcGCAUCGaGAA-GGACGc -3'
miRNA:   3'- -CGAGCUgCGGaUGUGGC-CUUgUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 24716 0.7 0.58821
Target:  5'- aCUCGGCgGCCUggGCGCCGGu---GACGu -3'
miRNA:   3'- cGAGCUG-CGGA--UGUGGCCuuguCUGC- -5'
18962 5' -54.3 NC_004683.1 + 5497 0.7 0.58821
Target:  5'- cCUCGGCgGCCgUGCAgUGGAGCugGGACGc -3'
miRNA:   3'- cGAGCUG-CGG-AUGUgGCCUUG--UCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.