miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 5' -54.3 NC_004683.1 + 33843 0.67 0.770107
Target:  5'- aGCUCG-CGCgguCGCCGGGaccaccGCAGGCc -3'
miRNA:   3'- -CGAGCuGCGgauGUGGCCU------UGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 19861 0.69 0.642748
Target:  5'- aGC-CaGCGgCaGCACCGGAACGGugGc -3'
miRNA:   3'- -CGaGcUGCgGaUGUGGCCUUGUCugC- -5'
18962 5' -54.3 NC_004683.1 + 8156 0.69 0.652574
Target:  5'- cGCUCGGCGCCgAgGCCGcGAaggccgcggccaaGCAGGgGc -3'
miRNA:   3'- -CGAGCUGCGGaUgUGGC-CU-------------UGUCUgC- -5'
18962 5' -54.3 NC_004683.1 + 28394 0.68 0.686257
Target:  5'- gGUUgGACGCa---GCCGGGgcGCGGGCGg -3'
miRNA:   3'- -CGAgCUGCGgaugUGGCCU--UGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 21952 0.67 0.739406
Target:  5'- gGCgggCGGcCGCCgaguuCACCGGc-CAGGCGg -3'
miRNA:   3'- -CGa--GCU-GCGGau---GUGGCCuuGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 6818 0.67 0.739406
Target:  5'- cGCUCGAUGUgUcgACGCUGGAcCGGuCGc -3'
miRNA:   3'- -CGAGCUGCGgA--UGUGGCCUuGUCuGC- -5'
18962 5' -54.3 NC_004683.1 + 48313 0.67 0.749762
Target:  5'- gGCUCGGUGUCUcCACCGaGAACcagaAGugGg -3'
miRNA:   3'- -CGAGCUGCGGAuGUGGC-CUUG----UCugC- -5'
18962 5' -54.3 NC_004683.1 + 21635 0.67 0.759999
Target:  5'- aCUgGGcCGUCUACACCcuGGAGCGcGGCGu -3'
miRNA:   3'- cGAgCU-GCGGAUGUGG--CCUUGU-CUGC- -5'
18962 5' -54.3 NC_004683.1 + 21431 0.67 0.770107
Target:  5'- --cCGACaGCg-GCGCCGGcGCAGACa -3'
miRNA:   3'- cgaGCUG-CGgaUGUGGCCuUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 23066 0.69 0.620894
Target:  5'- uGCUCGGCgGCCUGgugcuCACCGGcGCgcucucguGGGCGu -3'
miRNA:   3'- -CGAGCUG-CGGAU-----GUGGCCuUG--------UCUGC- -5'
18962 5' -54.3 NC_004683.1 + 5497 0.7 0.58821
Target:  5'- cCUCGGCgGCCgUGCAgUGGAGCugGGACGc -3'
miRNA:   3'- cGAGCUG-CGG-AUGUgGCCUUG--UCUGC- -5'
18962 5' -54.3 NC_004683.1 + 39138 0.7 0.566588
Target:  5'- uGCUCGAgGCCcGCAUCGaGAA-GGACGc -3'
miRNA:   3'- -CGAGCUgCGGaUGUGGC-CUUgUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 25879 0.81 0.138667
Target:  5'- gGCUCGGCGUCgaguuCGCCGG-GCAGACGc -3'
miRNA:   3'- -CGAGCUGCGGau---GUGGCCuUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 54062 0.73 0.396237
Target:  5'- cGCUcCGACGCCaACGCCGGugUGGAgCGu -3'
miRNA:   3'- -CGA-GCUGCGGaUGUGGCCuuGUCU-GC- -5'
18962 5' -54.3 NC_004683.1 + 41036 0.72 0.452842
Target:  5'- cCUCGGCGCCUACcucGCCGGcgAGCuGAUc -3'
miRNA:   3'- cGAGCUGCGGAUG---UGGCC--UUGuCUGc -5'
18962 5' -54.3 NC_004683.1 + 40348 0.72 0.462701
Target:  5'- uCUCGACGCCUcgggccugaccgACGCCGGucucACuGAUGa -3'
miRNA:   3'- cGAGCUGCGGA------------UGUGGCCu---UGuCUGC- -5'
18962 5' -54.3 NC_004683.1 + 365 0.72 0.47267
Target:  5'- cCUCGACaGUCgACACCGGuGCGGGCc -3'
miRNA:   3'- cGAGCUG-CGGaUGUGGCCuUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 26024 0.71 0.49395
Target:  5'- cGCUCGACGCagauccugcacaccaUGCACCGGuuCcGGCGc -3'
miRNA:   3'- -CGAGCUGCGg--------------AUGUGGCCuuGuCUGC- -5'
18962 5' -54.3 NC_004683.1 + 22713 0.71 0.503204
Target:  5'- gGUUCGACGCgCgucgGCACCGuaucAGCGGACa -3'
miRNA:   3'- -CGAGCUGCG-Ga---UGUGGCc---UUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 10373 0.71 0.503204
Target:  5'- cGC-CGACGCggGCAagaaugCGGGACAGGCGu -3'
miRNA:   3'- -CGaGCUGCGgaUGUg-----GCCUUGUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.