miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 5' -54.3 NC_004683.1 + 365 0.72 0.47267
Target:  5'- cCUCGACaGUCgACACCGGuGCGGGCc -3'
miRNA:   3'- cGAGCUG-CGGaUGUGGCCuUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 622 0.67 0.748731
Target:  5'- cCUCGGgGCCguaggucucgcugUACGCCGGGaaauuggcguacGCAGGCu -3'
miRNA:   3'- cGAGCUgCGG-------------AUGUGGCCU------------UGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 3670 0.75 0.320368
Target:  5'- cGCUCGACGCCgACGC-GGAcacgcCGGGCGg -3'
miRNA:   3'- -CGAGCUGCGGaUGUGgCCUu----GUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 5497 0.7 0.58821
Target:  5'- cCUCGGCgGCCgUGCAgUGGAGCugGGACGc -3'
miRNA:   3'- cGAGCUG-CGG-AUGUgGCCUUG--UCUGC- -5'
18962 5' -54.3 NC_004683.1 + 5686 0.66 0.815557
Target:  5'- aGCUCGAgGCCgUgacccucacgaccgGCACCGGccaGGGCa -3'
miRNA:   3'- -CGAGCUgCGG-A--------------UGUGGCCuugUCUGc -5'
18962 5' -54.3 NC_004683.1 + 6558 0.71 0.524029
Target:  5'- gGCUCGGCGCUggcguccucgACGCUGGcGC-GACGa -3'
miRNA:   3'- -CGAGCUGCGGa---------UGUGGCCuUGuCUGC- -5'
18962 5' -54.3 NC_004683.1 + 6625 0.67 0.770107
Target:  5'- gGC-CGGCGCCUGuguggUugCGGGcGCGGGCu -3'
miRNA:   3'- -CGaGCUGCGGAU-----GugGCCU-UGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 6818 0.67 0.739406
Target:  5'- cGCUCGAUGUgUcgACGCUGGAcCGGuCGc -3'
miRNA:   3'- -CGAGCUGCGgA--UGUGGCCUuGUCuGC- -5'
18962 5' -54.3 NC_004683.1 + 7058 0.69 0.620894
Target:  5'- uCUCGACGUCUgggcGCGCCGGcc--GACGa -3'
miRNA:   3'- cGAGCUGCGGA----UGUGGCCuuguCUGC- -5'
18962 5' -54.3 NC_004683.1 + 7168 0.66 0.799545
Target:  5'- cGCUgaGACGggUGCGcCCGGGugGGGCGg -3'
miRNA:   3'- -CGAg-CUGCggAUGU-GGCCUugUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 8108 0.69 0.609978
Target:  5'- cGCUCGaccgcgguGCGCau-CACCGGcugcauccAGCAGACGa -3'
miRNA:   3'- -CGAGC--------UGCGgauGUGGCC--------UUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 8156 0.69 0.652574
Target:  5'- cGCUCGGCGCCgAgGCCGcGAaggccgcggccaaGCAGGgGc -3'
miRNA:   3'- -CGAGCUGCGGaUgUGGC-CU-------------UGUCUgC- -5'
18962 5' -54.3 NC_004683.1 + 10373 0.71 0.503204
Target:  5'- cGC-CGACGCggGCAagaaugCGGGACAGGCGu -3'
miRNA:   3'- -CGaGCUGCGgaUGUg-----GCCUUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 11526 0.67 0.77111
Target:  5'- cGUUCGGCGCCgugcuggaugcccugGCAUCGGucaaGGACc -3'
miRNA:   3'- -CGAGCUGCGGa--------------UGUGGCCuug-UCUGc -5'
18962 5' -54.3 NC_004683.1 + 12414 0.66 0.818327
Target:  5'- aCUCGACGCUguugcGCGCCGacAGCAccGACGu -3'
miRNA:   3'- cGAGCUGCGGa----UGUGGCc-UUGU--CUGC- -5'
18962 5' -54.3 NC_004683.1 + 12935 0.66 0.80336
Target:  5'- uGCUCGACgGCCgcccCACCGGuggccggucucugucGaccacaauGCGGACGa -3'
miRNA:   3'- -CGAGCUG-CGGau--GUGGCC---------------U--------UGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 13292 0.67 0.728945
Target:  5'- cGCUCGGCGCa---GCaGGGAUGGugGg -3'
miRNA:   3'- -CGAGCUGCGgaugUGgCCUUGUCugC- -5'
18962 5' -54.3 NC_004683.1 + 15048 0.74 0.369696
Target:  5'- cCUCGACGCCguugcgcauCACCuuGAACAGGCGc -3'
miRNA:   3'- cGAGCUGCGGau-------GUGGc-CUUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 17306 0.69 0.631821
Target:  5'- cCUCGACGUUguacggggGCGCCGGggUcGGCa -3'
miRNA:   3'- cGAGCUGCGGa-------UGUGGCCuuGuCUGc -5'
18962 5' -54.3 NC_004683.1 + 18557 0.67 0.759999
Target:  5'- gGUUCGGCGUCUGCcgcauCCauucggGGAGCGGGuCGg -3'
miRNA:   3'- -CGAGCUGCGGAUGu----GG------CCUUGUCU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.