Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18963 | 5' | -52.7 | NC_004683.1 | + | 52403 | 1.14 | 0.001076 |
Target: 5'- aGGGCACGCAACGAACUCGUGACGUGGg -3' miRNA: 3'- -CCCGUGCGUUGCUUGAGCACUGCACC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 37816 | 0.75 | 0.403988 |
Target: 5'- aGGCACGUggcuacucggcuGAUGGGCUUGUGACGcGGc -3' miRNA: 3'- cCCGUGCG------------UUGCUUGAGCACUGCaCC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 2756 | 0.73 | 0.491798 |
Target: 5'- cGGC-CGCGGCGAGCUCGgcGGCGg-- -3' miRNA: 3'- cCCGuGCGUUGCUUGAGCa-CUGCacc -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 24079 | 0.73 | 0.512513 |
Target: 5'- cGGC-CGgGGCGGGCg-GUGGCGUGGu -3' miRNA: 3'- cCCGuGCgUUGCUUGagCACUGCACC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 24771 | 0.73 | 0.523005 |
Target: 5'- cGGCGCGCGGCcauGGcCUCGaUGACGUcGGg -3' miRNA: 3'- cCCGUGCGUUG---CUuGAGC-ACUGCA-CC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 41629 | 0.73 | 0.533578 |
Target: 5'- cGGGCGCGCGGCGAACauggcacucUCGcaaUGGCGc-- -3' miRNA: 3'- -CCCGUGCGUUGCUUG---------AGC---ACUGCacc -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 10744 | 0.73 | 0.533578 |
Target: 5'- cGGGCcaagACGCGGCGAACgaguUCGUcGGCG-GGu -3' miRNA: 3'- -CCCG----UGCGUUGCUUG----AGCA-CUGCaCC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 15299 | 0.72 | 0.554943 |
Target: 5'- cGGGCGCgGCAGCGAACUUGa-ACGUu- -3' miRNA: 3'- -CCCGUG-CGUUGCUUGAGCacUGCAcc -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 33500 | 0.72 | 0.565721 |
Target: 5'- uGGUGCGguACGAGCUCaucguggacGUcGGCGUGGu -3' miRNA: 3'- cCCGUGCguUGCUUGAG---------CA-CUGCACC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 56249 | 0.72 | 0.587429 |
Target: 5'- uGGGCGCgGUGGCcAGCgcggCGUGAgCGUGGg -3' miRNA: 3'- -CCCGUG-CGUUGcUUGa---GCACU-GCACC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 51714 | 0.71 | 0.609286 |
Target: 5'- cGGCAgCGCGaccGCGGGCUCGggGGCG-GGc -3' miRNA: 3'- cCCGU-GCGU---UGCUUGAGCa-CUGCaCC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 5729 | 0.71 | 0.620248 |
Target: 5'- cGGCgaacagcaGCGCGACGGuCUCGgUGACGuUGGc -3' miRNA: 3'- cCCG--------UGCGUUGCUuGAGC-ACUGC-ACC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 9941 | 0.71 | 0.631221 |
Target: 5'- uGGCAcCGCGGCG-AC-CGUGACGagcgGGg -3' miRNA: 3'- cCCGU-GCGUUGCuUGaGCACUGCa---CC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 22202 | 0.71 | 0.642194 |
Target: 5'- gGGGCGgGCGACGAGCcgccaccacucaUCGUGcagGCGUa- -3' miRNA: 3'- -CCCGUgCGUUGCUUG------------AGCAC---UGCAcc -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 44494 | 0.7 | 0.653158 |
Target: 5'- -uGCGCGCGACGAcUUCGgUGGCGUa- -3' miRNA: 3'- ccCGUGCGUUGCUuGAGC-ACUGCAcc -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 24737 | 0.7 | 0.664104 |
Target: 5'- uGGUGCGCAgcaggcgcGCGAACUCGgcGGCcUGGg -3' miRNA: 3'- cCCGUGCGU--------UGCUUGAGCa-CUGcACC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 8656 | 0.7 | 0.711764 |
Target: 5'- uGGGCagcuGCGCGACGAccuguucgcucacaaGCUCGaaagcGGCGUGu -3' miRNA: 3'- -CCCG----UGCGUUGCU---------------UGAGCa----CUGCACc -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 41562 | 0.69 | 0.728771 |
Target: 5'- aGGGCAgaaGaCAAUGAcGCUCGUGGCGa-- -3' miRNA: 3'- -CCCGUg--C-GUUGCU-UGAGCACUGCacc -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 2351 | 0.69 | 0.728771 |
Target: 5'- cGGCAUcgGCuACGggUUCG-GugGUGGc -3' miRNA: 3'- cCCGUG--CGuUGCuuGAGCaCugCACC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 24355 | 0.69 | 0.728771 |
Target: 5'- cGGGCccaugaGCGCGGCGuagGACUCGgcguaGGCGcGGg -3' miRNA: 3'- -CCCG------UGCGUUGC---UUGAGCa----CUGCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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