miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18963 5' -52.7 NC_004683.1 + 318 0.69 0.739279
Target:  5'- cGGGCA-GCAGCGGcggcaucgcggcGCUCG-GA-GUGGg -3'
miRNA:   3'- -CCCGUgCGUUGCU------------UGAGCaCUgCACC- -5'
18963 5' -52.7 NC_004683.1 + 1210 0.66 0.865336
Target:  5'- cGGcCGCGCuuGACGAGCUUgugcagcaccucggaGUcGGCGUGGc -3'
miRNA:   3'- cCC-GUGCG--UUGCUUGAG---------------CA-CUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 2351 0.69 0.728771
Target:  5'- cGGCAUcgGCuACGggUUCG-GugGUGGc -3'
miRNA:   3'- cCCGUG--CGuUGCuuGAGCaCugCACC- -5'
18963 5' -52.7 NC_004683.1 + 2756 0.73 0.491798
Target:  5'- cGGC-CGCGGCGAGCUCGgcGGCGg-- -3'
miRNA:   3'- cCCGuGCGUUGCUUGAGCa-CUGCacc -5'
18963 5' -52.7 NC_004683.1 + 3489 0.68 0.809193
Target:  5'- cGGCGgGCuACGAGC-CGgaaucgGugGUGGc -3'
miRNA:   3'- cCCGUgCGuUGCUUGaGCa-----CugCACC- -5'
18963 5' -52.7 NC_004683.1 + 5729 0.71 0.620248
Target:  5'- cGGCgaacagcaGCGCGACGGuCUCGgUGACGuUGGc -3'
miRNA:   3'- cCCG--------UGCGUUGCUuGAGC-ACUGC-ACC- -5'
18963 5' -52.7 NC_004683.1 + 6671 0.66 0.870125
Target:  5'- uGGC-CGCGGCGcgccGCUgGUGugGcUGGc -3'
miRNA:   3'- cCCGuGCGUUGCu---UGAgCACugC-ACC- -5'
18963 5' -52.7 NC_004683.1 + 8656 0.7 0.711764
Target:  5'- uGGGCagcuGCGCGACGAccuguucgcucacaaGCUCGaaagcGGCGUGu -3'
miRNA:   3'- -CCCG----UGCGUUGCU---------------UGAGCa----CUGCACc -5'
18963 5' -52.7 NC_004683.1 + 9941 0.71 0.631221
Target:  5'- uGGCAcCGCGGCG-AC-CGUGACGagcgGGg -3'
miRNA:   3'- cCCGU-GCGUUGCuUGaGCACUGCa---CC- -5'
18963 5' -52.7 NC_004683.1 + 10418 0.67 0.857161
Target:  5'- cGGCGCGCuuuGCGAcagcgguggcagaacGCUCGUcGAgCGUcGGu -3'
miRNA:   3'- cCCGUGCGu--UGCU---------------UGAGCA-CU-GCA-CC- -5'
18963 5' -52.7 NC_004683.1 + 10744 0.73 0.533578
Target:  5'- cGGGCcaagACGCGGCGAACgaguUCGUcGGCG-GGu -3'
miRNA:   3'- -CCCG----UGCGUUGCUUG----AGCA-CUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 12314 0.67 0.841864
Target:  5'- cGGCACGC--CGGGCgcucccgccccggCG-GGCGUGGg -3'
miRNA:   3'- cCCGUGCGuuGCUUGa------------GCaCUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 15299 0.72 0.554943
Target:  5'- cGGGCGCgGCAGCGAACUUGa-ACGUu- -3'
miRNA:   3'- -CCCGUG-CGUUGCUUGAGCacUGCAcc -5'
18963 5' -52.7 NC_004683.1 + 15590 0.66 0.892717
Target:  5'- cGGCG-GCAACGcaGACUCGaaGAuCGUGGc -3'
miRNA:   3'- cCCGUgCGUUGC--UUGAGCa-CU-GCACC- -5'
18963 5' -52.7 NC_004683.1 + 22202 0.71 0.642194
Target:  5'- gGGGCGgGCGACGAGCcgccaccacucaUCGUGcagGCGUa- -3'
miRNA:   3'- -CCCGUgCGUUGCUUG------------AGCAC---UGCAcc -5'
18963 5' -52.7 NC_004683.1 + 23383 0.66 0.892717
Target:  5'- -cGCGCuGCAGCGGgaugacgauGCUCGUGcCG-GGg -3'
miRNA:   3'- ccCGUG-CGUUGCU---------UGAGCACuGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 24043 0.67 0.826764
Target:  5'- gGGGCACGUAGCcguGCUCGacgagcuUGGCcaGGg -3'
miRNA:   3'- -CCCGUGCGUUGcu-UGAGC-------ACUGcaCC- -5'
18963 5' -52.7 NC_004683.1 + 24079 0.73 0.512513
Target:  5'- cGGC-CGgGGCGGGCg-GUGGCGUGGu -3'
miRNA:   3'- cCCGuGCgUUGCUUGagCACUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 24355 0.69 0.728771
Target:  5'- cGGGCccaugaGCGCGGCGuagGACUCGgcguaGGCGcGGg -3'
miRNA:   3'- -CCCG------UGCGUUGC---UUGAGCa----CUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 24737 0.7 0.664104
Target:  5'- uGGUGCGCAgcaggcgcGCGAACUCGgcGGCcUGGg -3'
miRNA:   3'- cCCGUGCGU--------UGCUUGAGCa-CUGcACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.