miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18963 5' -52.7 NC_004683.1 + 52403 1.14 0.001076
Target:  5'- aGGGCACGCAACGAACUCGUGACGUGGg -3'
miRNA:   3'- -CCCGUGCGUUGCUUGAGCACUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 31296 0.67 0.845326
Target:  5'- gGGGUuguGCAgcuGCGGGC-CGUGGCgGUGGc -3'
miRNA:   3'- -CCCGug-CGU---UGCUUGaGCACUG-CACC- -5'
18963 5' -52.7 NC_004683.1 + 47572 0.67 0.845326
Target:  5'- gGGGCGuccccUGCGACG-GCUgCGUGGCGgcguucGGg -3'
miRNA:   3'- -CCCGU-----GCGUUGCuUGA-GCACUGCa-----CC- -5'
18963 5' -52.7 NC_004683.1 + 6671 0.66 0.870125
Target:  5'- uGGC-CGCGGCGcgccGCUgGUGugGcUGGc -3'
miRNA:   3'- cCCGuGCGUUGCu---UGAgCACugC-ACC- -5'
18963 5' -52.7 NC_004683.1 + 38996 0.66 0.870125
Target:  5'- cGGGUACGUGACuaccuGCUCGaGACGgaguccgGGu -3'
miRNA:   3'- -CCCGUGCGUUGcu---UGAGCaCUGCa------CC- -5'
18963 5' -52.7 NC_004683.1 + 42300 0.66 0.870125
Target:  5'- cGGGCGCuguggaucgcgGCGugGGugUucgcCGUGaucGCGUGGg -3'
miRNA:   3'- -CCCGUG-----------CGUugCUugA----GCAC---UGCACC- -5'
18963 5' -52.7 NC_004683.1 + 32489 0.66 0.8847
Target:  5'- -cGCACGUAugcCGGGCaUCGUgcagccgGACGUGGc -3'
miRNA:   3'- ccCGUGCGUu--GCUUG-AGCA-------CUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 32668 0.66 0.892717
Target:  5'- cGGGCAgccuugaagGCAGCGAACaggUCGUcuGGCaGUGGc -3'
miRNA:   3'- -CCCGUg--------CGUUGCUUG---AGCA--CUG-CACC- -5'
18963 5' -52.7 NC_004683.1 + 15590 0.66 0.892717
Target:  5'- cGGCG-GCAACGcaGACUCGaaGAuCGUGGc -3'
miRNA:   3'- cCCGUgCGUUGC--UUGAGCa-CU-GCACC- -5'
18963 5' -52.7 NC_004683.1 + 3489 0.68 0.809193
Target:  5'- cGGCGgGCuACGAGC-CGgaaucgGugGUGGc -3'
miRNA:   3'- cCCGUgCGuUGCUUGaGCa-----CugCACC- -5'
18963 5' -52.7 NC_004683.1 + 41403 0.68 0.770112
Target:  5'- cGGCugGCGGCGuGGCUgGUGugGc-- -3'
miRNA:   3'- cCCGugCGUUGC-UUGAgCACugCacc -5'
18963 5' -52.7 NC_004683.1 + 34658 0.69 0.749679
Target:  5'- aGGGCACGUcAC--GCUCGUGACc--- -3'
miRNA:   3'- -CCCGUGCGuUGcuUGAGCACUGcacc -5'
18963 5' -52.7 NC_004683.1 + 37816 0.75 0.403988
Target:  5'- aGGCACGUggcuacucggcuGAUGGGCUUGUGACGcGGc -3'
miRNA:   3'- cCCGUGCG------------UUGCUUGAGCACUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 2756 0.73 0.491798
Target:  5'- cGGC-CGCGGCGAGCUCGgcGGCGg-- -3'
miRNA:   3'- cCCGuGCGUUGCUUGAGCa-CUGCacc -5'
18963 5' -52.7 NC_004683.1 + 10744 0.73 0.533578
Target:  5'- cGGGCcaagACGCGGCGAACgaguUCGUcGGCG-GGu -3'
miRNA:   3'- -CCCG----UGCGUUGCUUG----AGCA-CUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 41629 0.73 0.533578
Target:  5'- cGGGCGCGCGGCGAACauggcacucUCGcaaUGGCGc-- -3'
miRNA:   3'- -CCCGUGCGUUGCUUG---------AGC---ACUGCacc -5'
18963 5' -52.7 NC_004683.1 + 9941 0.71 0.631221
Target:  5'- uGGCAcCGCGGCG-AC-CGUGACGagcgGGg -3'
miRNA:   3'- cCCGU-GCGUUGCuUGaGCACUGCa---CC- -5'
18963 5' -52.7 NC_004683.1 + 22202 0.71 0.642194
Target:  5'- gGGGCGgGCGACGAGCcgccaccacucaUCGUGcagGCGUa- -3'
miRNA:   3'- -CCCGUgCGUUGCUUG------------AGCAC---UGCAcc -5'
18963 5' -52.7 NC_004683.1 + 8656 0.7 0.711764
Target:  5'- uGGGCagcuGCGCGACGAccuguucgcucacaaGCUCGaaagcGGCGUGu -3'
miRNA:   3'- -CCCG----UGCGUUGCU---------------UGAGCa----CUGCACc -5'
18963 5' -52.7 NC_004683.1 + 2351 0.69 0.728771
Target:  5'- cGGCAUcgGCuACGggUUCG-GugGUGGc -3'
miRNA:   3'- cCCGUG--CGuUGCuuGAGCaCugCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.