miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18964 3' -60.6 NC_004683.1 + 32781 0.66 0.452941
Target:  5'- -cCAGCCGGCgCGAGCUGCCa----- -3'
miRNA:   3'- caGUUGGCCGgGCUCGGUGGgcucau -5'
18964 3' -60.6 NC_004683.1 + 41003 0.66 0.443412
Target:  5'- gGUCAGCuCGgcGCCCGGGUCggAUCCGGGg- -3'
miRNA:   3'- -CAGUUG-GC--CGGGCUCGG--UGGGCUCau -5'
18964 3' -60.6 NC_004683.1 + 53390 0.66 0.41552
Target:  5'- aUCuACCuGCCCGAucccgaugcGCC-CCCGGGUGa -3'
miRNA:   3'- cAGuUGGcCGGGCU---------CGGuGGGCUCAU- -5'
18964 3' -60.6 NC_004683.1 + 17747 0.66 0.41552
Target:  5'- aUC-GCCGGCCUggucaaGGGCgACCCGGGc- -3'
miRNA:   3'- cAGuUGGCCGGG------CUCGgUGGGCUCau -5'
18964 3' -60.6 NC_004683.1 + 44108 0.66 0.41552
Target:  5'- cGUCGaggugACCGGCgCUGAGCCGCUgUGGGa- -3'
miRNA:   3'- -CAGU-----UGGCCG-GGCUCGGUGG-GCUCau -5'
18964 3' -60.6 NC_004683.1 + 23480 0.66 0.41552
Target:  5'- cUUAACUGGUCCGA-UCACCCGAu-- -3'
miRNA:   3'- cAGUUGGCCGGGCUcGGUGGGCUcau -5'
18964 3' -60.6 NC_004683.1 + 18549 0.66 0.406464
Target:  5'- -cCAACCGGCgCCaucAGCCugCCGAc-- -3'
miRNA:   3'- caGUUGGCCG-GGc--UCGGugGGCUcau -5'
18964 3' -60.6 NC_004683.1 + 9825 0.66 0.397533
Target:  5'- --gGAUCGGCgCCGAGCCgACUCGAa-- -3'
miRNA:   3'- cagUUGGCCG-GGCUCGG-UGGGCUcau -5'
18964 3' -60.6 NC_004683.1 + 33955 0.67 0.388729
Target:  5'- aUCGGCCGGCaCCGGuccCCGCUCGcGGUGg -3'
miRNA:   3'- cAGUUGGCCG-GGCUc--GGUGGGC-UCAU- -5'
18964 3' -60.6 NC_004683.1 + 1372 0.67 0.388729
Target:  5'- cGUCGACCGGCCUGcggguuGGCCAUgaUGAuGUAc -3'
miRNA:   3'- -CAGUUGGCCGGGC------UCGGUGg-GCU-CAU- -5'
18964 3' -60.6 NC_004683.1 + 1469 0.67 0.388729
Target:  5'- cUCGaucGCCGGCuuGucguGCCAgCCGAGg- -3'
miRNA:   3'- cAGU---UGGCCGggCu---CGGUgGGCUCau -5'
18964 3' -60.6 NC_004683.1 + 51932 0.67 0.380054
Target:  5'- gGUCGACgGGCgCGAGguacgcaCGCCCGcAGUGg -3'
miRNA:   3'- -CAGUUGgCCGgGCUCg------GUGGGC-UCAU- -5'
18964 3' -60.6 NC_004683.1 + 48485 0.67 0.346672
Target:  5'- gGUCAACCGGUCCGAgaaGUgGCUCGGc-- -3'
miRNA:   3'- -CAGUUGGCCGGGCU---CGgUGGGCUcau -5'
18964 3' -60.6 NC_004683.1 + 13797 0.67 0.346672
Target:  5'- aGUCAGCCGggccagcagcaGCCCG-GCCAgCCGAu-- -3'
miRNA:   3'- -CAGUUGGC-----------CGGGCuCGGUgGGCUcau -5'
18964 3' -60.6 NC_004683.1 + 6735 0.68 0.338662
Target:  5'- aGUCGA-CGGCCCGGGCgGCCgCGuGc- -3'
miRNA:   3'- -CAGUUgGCCGGGCUCGgUGG-GCuCau -5'
18964 3' -60.6 NC_004683.1 + 46050 0.68 0.337868
Target:  5'- aGUCGACgcguuugCGGCCCuuGGCCACC-GAGUGa -3'
miRNA:   3'- -CAGUUG-------GCCGGGc-UCGGUGGgCUCAU- -5'
18964 3' -60.6 NC_004683.1 + 33032 0.68 0.315443
Target:  5'- cGUCGACCGGaUCGAggccaauccaacGCCGCCCGAu-- -3'
miRNA:   3'- -CAGUUGGCCgGGCU------------CGGUGGGCUcau -5'
18964 3' -60.6 NC_004683.1 + 46298 0.68 0.307975
Target:  5'- uGUUGACCGG-CUGAcGCgGCCCGAGg- -3'
miRNA:   3'- -CAGUUGGCCgGGCU-CGgUGGGCUCau -5'
18964 3' -60.6 NC_004683.1 + 720 0.68 0.307975
Target:  5'- cGUCGACCGGCCauuCGAGUCGaugCCGAa-- -3'
miRNA:   3'- -CAGUUGGCCGG---GCUCGGUg--GGCUcau -5'
18964 3' -60.6 NC_004683.1 + 43990 0.69 0.286385
Target:  5'- aUCAGCUGGCaCuCGAccacGCCGCgCCGGGUGu -3'
miRNA:   3'- cAGUUGGCCG-G-GCU----CGGUG-GGCUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.