miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18964 5' -54.9 NC_004683.1 + 24310 0.66 0.776779
Target:  5'- cCGcUGCCAGUGCGUGacgucaUCACCccgggcgucgGAUGAGc -3'
miRNA:   3'- -GC-ACGGUCGUGCACa-----AGUGG----------CUGCUC- -5'
18964 5' -54.9 NC_004683.1 + 23395 0.66 0.76675
Target:  5'- --cGCCcGCgGCGg---CACCGACGAGg -3'
miRNA:   3'- gcaCGGuCG-UGCacaaGUGGCUGCUC- -5'
18964 5' -54.9 NC_004683.1 + 44542 0.66 0.76675
Target:  5'- --gGCCAucuGCACGUcGggCGCCGGCGcGg -3'
miRNA:   3'- gcaCGGU---CGUGCA-CaaGUGGCUGCuC- -5'
18964 5' -54.9 NC_004683.1 + 22789 0.66 0.756583
Target:  5'- gGUGCCGacGCGCGUcga-ACCGGCGuAGa -3'
miRNA:   3'- gCACGGU--CGUGCAcaagUGGCUGC-UC- -5'
18964 5' -54.9 NC_004683.1 + 51083 0.66 0.756583
Target:  5'- gCGgGCCgAGCAUGcgaaGUUCACCGACu-- -3'
miRNA:   3'- -GCaCGG-UCGUGCa---CAAGUGGCUGcuc -5'
18964 5' -54.9 NC_004683.1 + 6364 0.66 0.756583
Target:  5'- aCGUGCCc-CGCGUGgugCGCCccGGCGAc -3'
miRNA:   3'- -GCACGGucGUGCACaa-GUGG--CUGCUc -5'
18964 5' -54.9 NC_004683.1 + 24752 0.66 0.74629
Target:  5'- gGUGuCCGGCuacuCGcaGUcCGCCGACGGGu -3'
miRNA:   3'- gCAC-GGUCGu---GCa-CAaGUGGCUGCUC- -5'
18964 5' -54.9 NC_004683.1 + 8180 0.66 0.735883
Target:  5'- gGUGCCAGCcuCGggGUcgucggCGCCGuCGAGc -3'
miRNA:   3'- gCACGGUCGu-GCa-CAa-----GUGGCuGCUC- -5'
18964 5' -54.9 NC_004683.1 + 5457 0.66 0.735883
Target:  5'- --cGCCAGguCGUcgcCACCGGCGAu -3'
miRNA:   3'- gcaCGGUCguGCAcaaGUGGCUGCUc -5'
18964 5' -54.9 NC_004683.1 + 41041 0.67 0.714771
Target:  5'- gCG-GCCAGguCGgcgUgGCCGACGGGc -3'
miRNA:   3'- -GCaCGGUCguGCacaAgUGGCUGCUC- -5'
18964 5' -54.9 NC_004683.1 + 6609 0.67 0.704089
Target:  5'- --cGCCAagguGCGCGgccaGUUCGCCGACa-- -3'
miRNA:   3'- gcaCGGU----CGUGCa---CAAGUGGCUGcuc -5'
18964 5' -54.9 NC_004683.1 + 52578 0.67 0.682527
Target:  5'- --cGCCuGCACGUGcUUGCCGagccagcgcGCGAGa -3'
miRNA:   3'- gcaCGGuCGUGCACaAGUGGC---------UGCUC- -5'
18964 5' -54.9 NC_004683.1 + 9310 0.68 0.627974
Target:  5'- cCG-GCCAGCGCGUcccaggcggGacCGCCGAUGAa -3'
miRNA:   3'- -GCaCGGUCGUGCA---------CaaGUGGCUGCUc -5'
18964 5' -54.9 NC_004683.1 + 46692 0.68 0.617034
Target:  5'- aCG-GgCGGUACGUGgcgCACCGACGcGa -3'
miRNA:   3'- -GCaCgGUCGUGCACaa-GUGGCUGCuC- -5'
18964 5' -54.9 NC_004683.1 + 47475 0.69 0.595204
Target:  5'- aCGcGUCGuCACGUGUggGCCGugGAGg -3'
miRNA:   3'- -GCaCGGUcGUGCACAagUGGCugCUC- -5'
18964 5' -54.9 NC_004683.1 + 5236 0.69 0.573497
Target:  5'- aGUGCCuGGCgACGUcgUCGCCGGCGu- -3'
miRNA:   3'- gCACGG-UCG-UGCAcaAGUGGCUGCuc -5'
18964 5' -54.9 NC_004683.1 + 54076 0.69 0.551979
Target:  5'- --cGCCGGU--GUGgagcgUCACCGGCGAGu -3'
miRNA:   3'- gcaCGGUCGugCACa----AGUGGCUGCUC- -5'
18964 5' -54.9 NC_004683.1 + 48907 0.69 0.551979
Target:  5'- gCG-GCCAGCGCGU-UUCuuGCCGACGcGa -3'
miRNA:   3'- -GCaCGGUCGUGCAcAAG--UGGCUGCuC- -5'
18964 5' -54.9 NC_004683.1 + 53598 0.7 0.509751
Target:  5'- --cGCCGGcCGCGUcUUCGCCGcCGAGc -3'
miRNA:   3'- gcaCGGUC-GUGCAcAAGUGGCuGCUC- -5'
18964 5' -54.9 NC_004683.1 + 31531 0.71 0.478988
Target:  5'- gGUGUCGGCGuCGgccaCGCCGGCGAGc -3'
miRNA:   3'- gCACGGUCGU-GCacaaGUGGCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.