miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18965 3' -60.9 NC_004683.1 + 11702 0.66 0.44287
Target:  5'- aCGGGA-GCGCUGCagcggcaCGCCGAcGGuuGGg -3'
miRNA:   3'- -GUUCUcCGCGACGa------GCGGCU-CCggCU- -5'
18965 3' -60.9 NC_004683.1 + 12827 0.66 0.44287
Target:  5'- ----cGGCGCUGCUgGCCaacgucccgGcAGGCCGc -3'
miRNA:   3'- guucuCCGCGACGAgCGG---------C-UCCGGCu -5'
18965 3' -60.9 NC_004683.1 + 5647 0.66 0.44287
Target:  5'- cCGAGAccgucGCGCUGCuguUCGCCGaAGGCaagGAc -3'
miRNA:   3'- -GUUCUc----CGCGACG---AGCGGC-UCCGg--CU- -5'
18965 3' -60.9 NC_004683.1 + 26954 0.66 0.433493
Target:  5'- gCGAGAGgguccGCGCguacGCgugagCGCCGggcAGGCCGGc -3'
miRNA:   3'- -GUUCUC-----CGCGa---CGa----GCGGC---UCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 14120 0.66 0.424233
Target:  5'- uCGGGAauCGCcuUGC-CGCCGAGGaCCGAg -3'
miRNA:   3'- -GUUCUccGCG--ACGaGCGGCUCC-GGCU- -5'
18965 3' -60.9 NC_004683.1 + 46059 0.66 0.424233
Target:  5'- uGGGAcGUGCcccgGUUCGCCGAGGCg-- -3'
miRNA:   3'- gUUCUcCGCGa---CGAGCGGCUCCGgcu -5'
18965 3' -60.9 NC_004683.1 + 52028 0.66 0.415092
Target:  5'- ----cGGCGUUcCcgCGCCGAGGCUGGg -3'
miRNA:   3'- guucuCCGCGAcGa-GCGGCUCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 20396 0.66 0.415092
Target:  5'- gCGGGAcaugaacGCGCUGCcgccgUCGCCGccccGGCCGGg -3'
miRNA:   3'- -GUUCUc------CGCGACG-----AGCGGCu---CCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 25754 0.66 0.414185
Target:  5'- ---cGGGcCGCUGC-CGUCGAgcacgcuGGCCGAg -3'
miRNA:   3'- guucUCC-GCGACGaGCGGCU-------CCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 46918 0.66 0.397178
Target:  5'- --cGAGGCGCUGCcgacgUGCaCGAcGGUgGAg -3'
miRNA:   3'- guuCUCCGCGACGa----GCG-GCU-CCGgCU- -5'
18965 3' -60.9 NC_004683.1 + 2844 0.66 0.38841
Target:  5'- cCGAGuuGGcCGCcgccgaGCUCGCCGcGGCCGc -3'
miRNA:   3'- -GUUCu-CC-GCGa-----CGAGCGGCuCCGGCu -5'
18965 3' -60.9 NC_004683.1 + 51823 0.67 0.38321
Target:  5'- aCAGGAGauccaccagugaaGCUGUUCGCaCGGcGGCCGAc -3'
miRNA:   3'- -GUUCUCcg-----------CGACGAGCG-GCU-CCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 27082 0.67 0.37977
Target:  5'- gCGAG-GGUGauaugugGCUUGCCGAgguGGCCGGc -3'
miRNA:   3'- -GUUCuCCGCga-----CGAGCGGCU---CCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 51117 0.67 0.37977
Target:  5'- --cGGGGCGCggccgGCgcgaaggGCCGcaAGGCCGAc -3'
miRNA:   3'- guuCUCCGCGa----CGag-----CGGC--UCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 10424 0.67 0.362879
Target:  5'- --uGGGGCGCgGgaUGCCGAccaGGCCGu -3'
miRNA:   3'- guuCUCCGCGaCgaGCGGCU---CCGGCu -5'
18965 3' -60.9 NC_004683.1 + 30511 0.68 0.33069
Target:  5'- --cGAGGUGgaUG-UCGCUGAGGCUGAu -3'
miRNA:   3'- guuCUCCGCg-ACgAGCGGCUCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 10594 0.68 0.33069
Target:  5'- uCGAGaAGGCGC-GCcgCGCUGAGGUgCGGg -3'
miRNA:   3'- -GUUC-UCCGCGaCGa-GCGGCUCCG-GCU- -5'
18965 3' -60.9 NC_004683.1 + 10191 0.68 0.322978
Target:  5'- --cGAGGCGCgugaGCggGCCGAGgaacaggccGCCGAa -3'
miRNA:   3'- guuCUCCGCGa---CGagCGGCUC---------CGGCU- -5'
18965 3' -60.9 NC_004683.1 + 45301 0.68 0.293481
Target:  5'- -uAGAGGCGCUGacgauCUCGgCGAGcGCgCGGu -3'
miRNA:   3'- guUCUCCGCGAC-----GAGCgGCUC-CG-GCU- -5'
18965 3' -60.9 NC_004683.1 + 40483 0.69 0.279539
Target:  5'- -uGGA-GCGCggcaggucgaGCUCGUCGAGGUCGAg -3'
miRNA:   3'- guUCUcCGCGa---------CGAGCGGCUCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.