miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18968 3' -53.5 NC_004683.1 + 54617 1.11 0.001508
Target:  5'- cGCCGACCGGACGAUCGCCAACAUUCGc -3'
miRNA:   3'- -CGGCUGGCCUGCUAGCGGUUGUAAGC- -5'
18968 3' -53.5 NC_004683.1 + 44378 0.73 0.458993
Target:  5'- gGUCGGugcCCGGGCGAUCGUCGGCg--CGg -3'
miRNA:   3'- -CGGCU---GGCCUGCUAGCGGUUGuaaGC- -5'
18968 3' -53.5 NC_004683.1 + 44914 0.73 0.47596
Target:  5'- -aCGGCCGGACGGUucaccaguggccagCGCCuGCcgUCGa -3'
miRNA:   3'- cgGCUGGCCUGCUA--------------GCGGuUGuaAGC- -5'
18968 3' -53.5 NC_004683.1 + 38067 0.72 0.489144
Target:  5'- uGCCGcUCGGACGAagCGCCcuaAACGUUCc -3'
miRNA:   3'- -CGGCuGGCCUGCUa-GCGG---UUGUAAGc -5'
18968 3' -53.5 NC_004683.1 + 53944 0.72 0.4994
Target:  5'- gGCCGACgaGGcCGGUCuGCCGAguUUCGa -3'
miRNA:   3'- -CGGCUGg-CCuGCUAG-CGGUUguAAGC- -5'
18968 3' -53.5 NC_004683.1 + 7407 0.72 0.50975
Target:  5'- cGgCGGCCGGGCGcgCuGCC-ACAUUCc -3'
miRNA:   3'- -CgGCUGGCCUGCuaG-CGGuUGUAAGc -5'
18968 3' -53.5 NC_004683.1 + 27953 0.72 0.52019
Target:  5'- uGCCucGCCGGGCGG-CGCCAAUGUcUCGc -3'
miRNA:   3'- -CGGc-UGGCCUGCUaGCGGUUGUA-AGC- -5'
18968 3' -53.5 NC_004683.1 + 42233 0.72 0.530712
Target:  5'- gGUCGGgCGGACGGacCGCCAGCAgacCGg -3'
miRNA:   3'- -CGGCUgGCCUGCUa-GCGGUUGUaa-GC- -5'
18968 3' -53.5 NC_004683.1 + 45166 0.71 0.541311
Target:  5'- gGCCGACCGcagcGACG-UUGCCcgguCGUUCGg -3'
miRNA:   3'- -CGGCUGGC----CUGCuAGCGGuu--GUAAGC- -5'
18968 3' -53.5 NC_004683.1 + 2660 0.71 0.541311
Target:  5'- gGCCGguaacucguACUGGACGAUCGUUGACggugaGUUCGu -3'
miRNA:   3'- -CGGC---------UGGCCUGCUAGCGGUUG-----UAAGC- -5'
18968 3' -53.5 NC_004683.1 + 31611 0.71 0.56271
Target:  5'- cGCCGGCgUGGcCGA-CGCCGACAccaugUCGg -3'
miRNA:   3'- -CGGCUG-GCCuGCUaGCGGUUGUa----AGC- -5'
18968 3' -53.5 NC_004683.1 + 8547 0.71 0.56271
Target:  5'- aCCGcACCGGcCuGAUCGCCGugGCGUUCc -3'
miRNA:   3'- cGGC-UGGCCuG-CUAGCGGU--UGUAAGc -5'
18968 3' -53.5 NC_004683.1 + 24404 0.71 0.58433
Target:  5'- gGCC-ACCGcGGCGAUCGUCGGCuacggCGg -3'
miRNA:   3'- -CGGcUGGC-CUGCUAGCGGUUGuaa--GC- -5'
18968 3' -53.5 NC_004683.1 + 37311 0.7 0.606108
Target:  5'- aGCCGaaGCCGaGACGAUCGCaAACA--CGg -3'
miRNA:   3'- -CGGC--UGGC-CUGCUAGCGgUUGUaaGC- -5'
18968 3' -53.5 NC_004683.1 + 5970 0.7 0.615941
Target:  5'- gGCCGGCCGGugggugaggcgagGCGAUggaCGCCAACuggaacaccUCGg -3'
miRNA:   3'- -CGGCUGGCC-------------UGCUA---GCGGUUGua-------AGC- -5'
18968 3' -53.5 NC_004683.1 + 55780 0.7 0.617034
Target:  5'- cGCCG-CC-GACGA-CGCCAGCGUUg- -3'
miRNA:   3'- -CGGCuGGcCUGCUaGCGGUUGUAAgc -5'
18968 3' -53.5 NC_004683.1 + 54103 0.7 0.627973
Target:  5'- cGUCGGCgCGGAUGAUgGuCCAGCcgUUGc -3'
miRNA:   3'- -CGGCUG-GCCUGCUAgC-GGUUGuaAGC- -5'
18968 3' -53.5 NC_004683.1 + 36126 0.7 0.627973
Target:  5'- cGUCGAUCGG-CGAUCGCUAug--UCGu -3'
miRNA:   3'- -CGGCUGGCCuGCUAGCGGUuguaAGC- -5'
18968 3' -53.5 NC_004683.1 + 55513 0.7 0.649854
Target:  5'- uGUCGACUGGACuGGUCaCCAGC--UCGa -3'
miRNA:   3'- -CGGCUGGCCUG-CUAGcGGUUGuaAGC- -5'
18968 3' -53.5 NC_004683.1 + 26973 0.69 0.660775
Target:  5'- gGCCGACCucgccgauGACGccGUCGUCAGCAU-CGa -3'
miRNA:   3'- -CGGCUGGc-------CUGC--UAGCGGUUGUAaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.