miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18968 3' -53.5 NC_004683.1 + 1384 0.67 0.815311
Target:  5'- cUCGGCUGGcACGAcaaGCCGGCGaUCGa -3'
miRNA:   3'- cGGCUGGCC-UGCUag-CGGUUGUaAGC- -5'
18968 3' -53.5 NC_004683.1 + 1643 0.67 0.815311
Target:  5'- gGCCGcCgGGACGAUU-CCAACGUg-- -3'
miRNA:   3'- -CGGCuGgCCUGCUAGcGGUUGUAagc -5'
18968 3' -53.5 NC_004683.1 + 1761 0.68 0.714771
Target:  5'- cGCCGGCCGcGcuGCGAUCGUCGAgGc--- -3'
miRNA:   3'- -CGGCUGGC-C--UGCUAGCGGUUgUaagc -5'
18968 3' -53.5 NC_004683.1 + 1784 0.69 0.704089
Target:  5'- cGCCGGCC-GACG-UUGCCAgggcguguggcACGUUCu -3'
miRNA:   3'- -CGGCUGGcCUGCuAGCGGU-----------UGUAAGc -5'
18968 3' -53.5 NC_004683.1 + 2402 0.68 0.74629
Target:  5'- gGCCGGCCcgucGACGGaauuggCGCCugacACGUUCGu -3'
miRNA:   3'- -CGGCUGGc---CUGCUa-----GCGGu---UGUAAGC- -5'
18968 3' -53.5 NC_004683.1 + 2660 0.71 0.541311
Target:  5'- gGCCGguaacucguACUGGACGAUCGUUGACggugaGUUCGu -3'
miRNA:   3'- -CGGC---------UGGCCUGCUAGCGGUUG-----UAAGC- -5'
18968 3' -53.5 NC_004683.1 + 2951 0.66 0.850807
Target:  5'- uGCCGACCaGGCGAUgaGCaAGCAUcaggCGa -3'
miRNA:   3'- -CGGCUGGcCUGCUAg-CGgUUGUAa---GC- -5'
18968 3' -53.5 NC_004683.1 + 3713 0.66 0.859136
Target:  5'- uGCCGGCgaGGACGGUgaGCCAAacgaCGg -3'
miRNA:   3'- -CGGCUGg-CCUGCUAg-CGGUUguaaGC- -5'
18968 3' -53.5 NC_004683.1 + 4541 0.66 0.833477
Target:  5'- uCCGAgCgGGugGAUCGCUGcGCGUcgUCGg -3'
miRNA:   3'- cGGCU-GgCCugCUAGCGGU-UGUA--AGC- -5'
18968 3' -53.5 NC_004683.1 + 4973 0.69 0.704089
Target:  5'- aGUCGAUCGGACGcggGCCA--GUUCGg -3'
miRNA:   3'- -CGGCUGGCCUGCuagCGGUugUAAGC- -5'
18968 3' -53.5 NC_004683.1 + 5525 0.68 0.734837
Target:  5'- cGCCGAguucgaggaagucUCGGACGAcUCGCCcgaGUUUGg -3'
miRNA:   3'- -CGGCU-------------GGCCUGCU-AGCGGuugUAAGC- -5'
18968 3' -53.5 NC_004683.1 + 5970 0.7 0.615941
Target:  5'- gGCCGGCCGGugggugaggcgagGCGAUggaCGCCAACuggaacaccUCGg -3'
miRNA:   3'- -CGGCUGGCC-------------UGCUA---GCGGUUGua-------AGC- -5'
18968 3' -53.5 NC_004683.1 + 6877 0.69 0.682527
Target:  5'- gGCCG-CUGGACGG-CGCgCGACGgcgCGa -3'
miRNA:   3'- -CGGCuGGCCUGCUaGCG-GUUGUaa-GC- -5'
18968 3' -53.5 NC_004683.1 + 6945 0.66 0.824494
Target:  5'- gGCCGACuggcggCGGGCGGUgGUgCAGCucgUCGg -3'
miRNA:   3'- -CGGCUG------GCCUGCUAgCG-GUUGua-AGC- -5'
18968 3' -53.5 NC_004683.1 + 7407 0.72 0.50975
Target:  5'- cGgCGGCCGGGCGcgCuGCC-ACAUUCc -3'
miRNA:   3'- -CgGCUGGCCUGCuaG-CGGuUGUAAGc -5'
18968 3' -53.5 NC_004683.1 + 8547 0.71 0.56271
Target:  5'- aCCGcACCGGcCuGAUCGCCGugGCGUUCc -3'
miRNA:   3'- cGGC-UGGCCuG-CUAGCGGU--UGUAAGc -5'
18968 3' -53.5 NC_004683.1 + 8983 0.66 0.859136
Target:  5'- aGCCaGCCGGuCGA-CGCCGAgAagaUCGg -3'
miRNA:   3'- -CGGcUGGCCuGCUaGCGGUUgUa--AGC- -5'
18968 3' -53.5 NC_004683.1 + 10460 0.68 0.725373
Target:  5'- uGCCGAUCGGGCGucggaCGCCuACGa--- -3'
miRNA:   3'- -CGGCUGGCCUGCua---GCGGuUGUaagc -5'
18968 3' -53.5 NC_004683.1 + 12419 0.67 0.786661
Target:  5'- cGCCGACUcGACGcuguugcgCGCCGACAgcacCGa -3'
miRNA:   3'- -CGGCUGGcCUGCua------GCGGUUGUaa--GC- -5'
18968 3' -53.5 NC_004683.1 + 12756 0.67 0.805937
Target:  5'- cGCCucgGAUCGGGuuagccgcgcUGAUCGCCGACAg-CGg -3'
miRNA:   3'- -CGG---CUGGCCU----------GCUAGCGGUUGUaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.