Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18968 | 3' | -53.5 | NC_004683.1 | + | 52311 | 0.68 | 0.725373 |
Target: 5'- aGCUGGCCcaggcgcucaaGGACGGcCGauuCCGGCGUUCGg -3' miRNA: 3'- -CGGCUGG-----------CCUGCUaGC---GGUUGUAAGC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 6877 | 0.69 | 0.682527 |
Target: 5'- gGCCG-CUGGACGG-CGCgCGACGgcgCGa -3' miRNA: 3'- -CGGCuGGCCUGCUaGCG-GUUGUaa-GC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 39899 | 0.69 | 0.693337 |
Target: 5'- gGuuGGCCGGACGAcggUCuaCAGCuGUUCa -3' miRNA: 3'- -CggCUGGCCUGCU---AGcgGUUG-UAAGc -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 1784 | 0.69 | 0.704089 |
Target: 5'- cGCCGGCC-GACG-UUGCCAgggcguguggcACGUUCu -3' miRNA: 3'- -CGGCUGGcCUGCuAGCGGU-----------UGUAAGc -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 55867 | 0.68 | 0.714771 |
Target: 5'- cGCCGGCCaacucgucuacGGGCGcgcGUCGCCAccgUAUUCa -3' miRNA: 3'- -CGGCUGG-----------CCUGC---UAGCGGUu--GUAAGc -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 10460 | 0.68 | 0.725373 |
Target: 5'- uGCCGAUCGGGCGucggaCGCCuACGa--- -3' miRNA: 3'- -CGGCUGGCCUGCua---GCGGuUGUaagc -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 18191 | 0.68 | 0.725373 |
Target: 5'- cGUCG-CCGGAC-AUCGCCGuagACAUcgUCGc -3' miRNA: 3'- -CGGCuGGCCUGcUAGCGGU---UGUA--AGC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 47019 | 0.68 | 0.725373 |
Target: 5'- aGCCGGCgCGcacGAUGAUgGCCAACGggcCGa -3' miRNA: 3'- -CGGCUG-GC---CUGCUAgCGGUUGUaa-GC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 51146 | 0.68 | 0.725373 |
Target: 5'- gGCCGACUGGACG---GCCA-CGUggCGg -3' miRNA: 3'- -CGGCUGGCCUGCuagCGGUuGUAa-GC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 36126 | 0.7 | 0.627973 |
Target: 5'- cGUCGAUCGG-CGAUCGCUAug--UCGu -3' miRNA: 3'- -CGGCUGGCCuGCUAGCGGUuguaAGC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 5970 | 0.7 | 0.615941 |
Target: 5'- gGCCGGCCGGugggugaggcgagGCGAUggaCGCCAACuggaacaccUCGg -3' miRNA: 3'- -CGGCUGGCC-------------UGCUA---GCGGUUGua-------AGC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 24404 | 0.71 | 0.58433 |
Target: 5'- gGCC-ACCGcGGCGAUCGUCGGCuacggCGg -3' miRNA: 3'- -CGGcUGGC-CUGCUAGCGGUUGuaa--GC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 44914 | 0.73 | 0.47596 |
Target: 5'- -aCGGCCGGACGGUucaccaguggccagCGCCuGCcgUCGa -3' miRNA: 3'- cgGCUGGCCUGCUA--------------GCGGuUGuaAGC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 38067 | 0.72 | 0.489144 |
Target: 5'- uGCCGcUCGGACGAagCGCCcuaAACGUUCc -3' miRNA: 3'- -CGGCuGGCCUGCUa-GCGG---UUGUAAGc -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 53944 | 0.72 | 0.4994 |
Target: 5'- gGCCGACgaGGcCGGUCuGCCGAguUUCGa -3' miRNA: 3'- -CGGCUGg-CCuGCUAG-CGGUUguAAGC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 7407 | 0.72 | 0.50975 |
Target: 5'- cGgCGGCCGGGCGcgCuGCC-ACAUUCc -3' miRNA: 3'- -CgGCUGGCCUGCuaG-CGGuUGUAAGc -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 27953 | 0.72 | 0.52019 |
Target: 5'- uGCCucGCCGGGCGG-CGCCAAUGUcUCGc -3' miRNA: 3'- -CGGc-UGGCCUGCUaGCGGUUGUA-AGC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 2660 | 0.71 | 0.541311 |
Target: 5'- gGCCGguaacucguACUGGACGAUCGUUGACggugaGUUCGu -3' miRNA: 3'- -CGGC---------UGGCCUGCUAGCGGUUG-----UAAGC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 45166 | 0.71 | 0.541311 |
Target: 5'- gGCCGACCGcagcGACG-UUGCCcgguCGUUCGg -3' miRNA: 3'- -CGGCUGGC----CUGCuAGCGGuu--GUAAGC- -5' |
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18968 | 3' | -53.5 | NC_004683.1 | + | 8547 | 0.71 | 0.56271 |
Target: 5'- aCCGcACCGGcCuGAUCGCCGugGCGUUCc -3' miRNA: 3'- cGGC-UGGCCuG-CUAGCGGU--UGUAAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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