Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18968 | 5' | -51.3 | NC_004683.1 | + | 54652 | 1.12 | 0.002186 |
Target: 5'- cCCCGAACGCCAACAUCGUCAUCGUCGa -3' miRNA: 3'- -GGGCUUGCGGUUGUAGCAGUAGCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 47754 | 0.76 | 0.414125 |
Target: 5'- aCCCGAuACGCCAggcacACAcCGUCGUCG-CGg -3' miRNA: 3'- -GGGCU-UGCGGU-----UGUaGCAGUAGCaGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 17883 | 0.76 | 0.423601 |
Target: 5'- gCCGuGCGCCAGCggCGUCA-CGUUGa -3' miRNA: 3'- gGGCuUGCGGUUGuaGCAGUaGCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 46068 | 0.75 | 0.492309 |
Target: 5'- cCCCGGuuCGCCGAggcgcaccgcuacCAggcCGUCAUCGUCGa -3' miRNA: 3'- -GGGCUu-GCGGUU-------------GUa--GCAGUAGCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 12597 | 0.75 | 0.514236 |
Target: 5'- gCCCGGAcuCGCCGACAaccUCGUgCGauUCGUCGc -3' miRNA: 3'- -GGGCUU--GCGGUUGU---AGCA-GU--AGCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 1316 | 0.74 | 0.53548 |
Target: 5'- gCCCGGAUaGCCGACAuagugcggacacUCGUCGUCcUCGc -3' miRNA: 3'- -GGGCUUG-CGGUUGU------------AGCAGUAGcAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 3123 | 0.73 | 0.622841 |
Target: 5'- aCCCGGGCGCCGAUGcCGaUGUgGUCGg -3' miRNA: 3'- -GGGCUUGCGGUUGUaGCaGUAgCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 14363 | 0.72 | 0.644944 |
Target: 5'- cCCCGGACGUgagCAACAUCGgcgaAUCGUg- -3' miRNA: 3'- -GGGCUUGCG---GUUGUAGCag--UAGCAgc -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 37418 | 0.71 | 0.710626 |
Target: 5'- gCCCGGAUGuCCAACGUCGg-GUCGa-- -3' miRNA: 3'- -GGGCUUGC-GGUUGUAGCagUAGCagc -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 41429 | 0.71 | 0.710626 |
Target: 5'- aCCgGAAUGCCGuacaaggcaacaGCAUCGUCGacgcCGUCa -3' miRNA: 3'- -GGgCUUGCGGU------------UGUAGCAGUa---GCAGc -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 34341 | 0.71 | 0.721367 |
Target: 5'- gCuuGAugGCCucgGCAUCG-CGUgCGUCGa -3' miRNA: 3'- -GggCUugCGGu--UGUAGCaGUA-GCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 56854 | 0.71 | 0.721367 |
Target: 5'- cCUCGGuaGCGgCuGCgGUCGUCGUCGUCGu -3' miRNA: 3'- -GGGCU--UGCgGuUG-UAGCAGUAGCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 46285 | 0.7 | 0.742569 |
Target: 5'- aCCGAACGCCuGCG-CGUgCAUCGa-- -3' miRNA: 3'- gGGCUUGCGGuUGUaGCA-GUAGCagc -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 39648 | 0.7 | 0.763321 |
Target: 5'- aCCCGAGgGCCGcuACGUCGagAUgcuuggaaCGUCGg -3' miRNA: 3'- -GGGCUUgCGGU--UGUAGCagUA--------GCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 47666 | 0.7 | 0.773498 |
Target: 5'- gCCCGAACGCCGcCA-CG-CAgcCGUCGc -3' miRNA: 3'- -GGGCUUGCGGUuGUaGCaGUa-GCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 26972 | 0.7 | 0.773498 |
Target: 5'- gCCGAccuCGCCGAUGaCGcCGUCGUCa -3' miRNA: 3'- gGGCUu--GCGGUUGUaGCaGUAGCAGc -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 16034 | 0.7 | 0.773498 |
Target: 5'- gCCGAAuuCGUCGAUGUCGUCccagaacUCGUCGc -3' miRNA: 3'- gGGCUU--GCGGUUGUAGCAGu------AGCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 56016 | 0.7 | 0.773498 |
Target: 5'- aCCGc-CGCCGACuUCGUCucCGUCGa -3' miRNA: 3'- gGGCuuGCGGUUGuAGCAGuaGCAGC- -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 24721 | 0.7 | 0.773498 |
Target: 5'- aCCGcAACGCCcGCGUCGaCGUCGa-- -3' miRNA: 3'- gGGC-UUGCGGuUGUAGCaGUAGCagc -5' |
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18968 | 5' | -51.3 | NC_004683.1 | + | 6443 | 0.69 | 0.793401 |
Target: 5'- aCCGGucgaggucaAUGCCgAGCGUCGUCGcgccagCGUCGa -3' miRNA: 3'- gGGCU---------UGCGG-UUGUAGCAGUa-----GCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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