miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18968 5' -51.3 NC_004683.1 + 933 0.68 0.865403
Target:  5'- gCCCgGAugGCCAGCG-CGUgAUCuUCa -3'
miRNA:   3'- -GGG-CUugCGGUUGUaGCAgUAGcAGc -5'
18968 5' -51.3 NC_004683.1 + 1316 0.74 0.53548
Target:  5'- gCCCGGAUaGCCGACAuagugcggacacUCGUCGUCcUCGc -3'
miRNA:   3'- -GGGCUUG-CGGUUGU------------AGCAGUAGcAGC- -5'
18968 5' -51.3 NC_004683.1 + 1585 0.67 0.909431
Target:  5'- gCCCGcGGCGgCAACGUCGccaCAUUGcCGg -3'
miRNA:   3'- -GGGC-UUGCgGUUGUAGCa--GUAGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 2407 0.66 0.945571
Target:  5'- gUUGAACGCgAAC-UCGUUcagcaucugggcguaGUCGUCGa -3'
miRNA:   3'- gGGCUUGCGgUUGuAGCAG---------------UAGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 3123 0.73 0.622841
Target:  5'- aCCCGGGCGCCGAUGcCGaUGUgGUCGg -3'
miRNA:   3'- -GGGCUUGCGGUUGUaGCaGUAgCAGC- -5'
18968 5' -51.3 NC_004683.1 + 3475 0.67 0.902758
Target:  5'- --gGAACGgC-ACGUCGUCggCGUCGu -3'
miRNA:   3'- gggCUUGCgGuUGUAGCAGuaGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 3512 0.67 0.888601
Target:  5'- uUCUGGAUGUCGGCcgCGUCcuucUCGUCc -3'
miRNA:   3'- -GGGCUUGCGGUUGuaGCAGu---AGCAGc -5'
18968 5' -51.3 NC_004683.1 + 3784 0.66 0.943645
Target:  5'- aCCGuccuCGCCGGCAUCGcgCAaCGUg- -3'
miRNA:   3'- gGGCuu--GCGGUUGUAGCa-GUaGCAgc -5'
18968 5' -51.3 NC_004683.1 + 3910 0.66 0.921949
Target:  5'- uCCCGAuCGCCAGCcugCGcagCAUCGcUGa -3'
miRNA:   3'- -GGGCUuGCGGUUGua-GCa--GUAGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 4834 0.66 0.92779
Target:  5'- aUCCGGGCGUgGACcUCGUCGgccCGguugCGg -3'
miRNA:   3'- -GGGCUUGCGgUUGuAGCAGUa--GCa---GC- -5'
18968 5' -51.3 NC_004683.1 + 5229 0.66 0.921949
Target:  5'- gCCCGucagUGCCuGGCGaCGUCGUCGcCGg -3'
miRNA:   3'- -GGGCuu--GCGG-UUGUaGCAGUAGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 5431 0.67 0.888601
Target:  5'- cCCUGAACGaCAucCGUCGUUucgcccgccagGUCGUCGc -3'
miRNA:   3'- -GGGCUUGCgGUu-GUAGCAG-----------UAGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 6443 0.69 0.793401
Target:  5'- aCCGGucgaggucaAUGCCgAGCGUCGUCGcgccagCGUCGa -3'
miRNA:   3'- gGGCU---------UGCGG-UUGUAGCAGUa-----GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 6806 0.66 0.92779
Target:  5'- gCCCGGGcCGUCGACuuccaugaCGUCAUCGa-- -3'
miRNA:   3'- -GGGCUU-GCGGUUGua------GCAGUAGCagc -5'
18968 5' -51.3 NC_004683.1 + 6881 0.66 0.938637
Target:  5'- gCUGGacgGCGCgCGACGgcgCGaUCGUCGUCa -3'
miRNA:   3'- gGGCU---UGCG-GUUGUa--GC-AGUAGCAGc -5'
18968 5' -51.3 NC_004683.1 + 7357 0.69 0.812625
Target:  5'- cCUCGGugGCC-ACGUuCGUCuggcCGUCGg -3'
miRNA:   3'- -GGGCUugCGGuUGUA-GCAGua--GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 12418 0.69 0.837351
Target:  5'- gCCGAcucgacgcuguugcGCGCCGACAgcaccgaCGUCucagCGUCGu -3'
miRNA:   3'- gGGCU--------------UGCGGUUGUa------GCAGua--GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 12597 0.75 0.514236
Target:  5'- gCCCGGAcuCGCCGACAaccUCGUgCGauUCGUCGc -3'
miRNA:   3'- -GGGCUU--GCGGUUGU---AGCA-GU--AGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 12648 0.67 0.888601
Target:  5'- cCUCGGaaAUGCCGAgGUCGUUGUCGa-- -3'
miRNA:   3'- -GGGCU--UGCGGUUgUAGCAGUAGCagc -5'
18968 5' -51.3 NC_004683.1 + 14363 0.72 0.644944
Target:  5'- cCCCGGACGUgagCAACAUCGgcgaAUCGUg- -3'
miRNA:   3'- -GGGCUUGCG---GUUGUAGCag--UAGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.