miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18968 5' -51.3 NC_004683.1 + 28343 0.68 0.873389
Target:  5'- aCCgCGAGCGCCcGCAgcUCGgCAUCGa-- -3'
miRNA:   3'- -GG-GCUUGCGGuUGU--AGCaGUAGCagc -5'
18968 5' -51.3 NC_004683.1 + 53100 0.69 0.831086
Target:  5'- cCCCGAGCcaucgGCCGGgG-CGuUCGUCGUUGg -3'
miRNA:   3'- -GGGCUUG-----CGGUUgUaGC-AGUAGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 40927 0.68 0.848702
Target:  5'- aCCCGGGCGCCGagcugaccGCGcCGcCGUugccCGUCGg -3'
miRNA:   3'- -GGGCUUGCGGU--------UGUaGCaGUA----GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 18184 0.68 0.848702
Target:  5'- aCCGGcucguCGCCgGACAUCGccguagaCAUCGUCGc -3'
miRNA:   3'- gGGCUu----GCGG-UUGUAGCa------GUAGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 55692 0.68 0.857171
Target:  5'- gUCCGcugcucAACGCUGGCGUCGUCGgcggcgacCGUCa -3'
miRNA:   3'- -GGGC------UUGCGGUUGUAGCAGUa-------GCAGc -5'
18968 5' -51.3 NC_004683.1 + 933 0.68 0.865403
Target:  5'- gCCCgGAugGCCAGCG-CGUgAUCuUCa -3'
miRNA:   3'- -GGG-CUugCGGUUGUaGCAgUAGcAGc -5'
18968 5' -51.3 NC_004683.1 + 47215 0.68 0.865403
Target:  5'- aCCGGccGCGCgaGACcUCGUCGgugUCGUCGc -3'
miRNA:   3'- gGGCU--UGCGg-UUGuAGCAGU---AGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 45000 0.68 0.873389
Target:  5'- aCCUGGAgaugccaGCCAGCGUCGUCAacaaucacaUCGaCGc -3'
miRNA:   3'- -GGGCUUg------CGGUUGUAGCAGU---------AGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 29618 0.68 0.873389
Target:  5'- gCCCaGACGCCGuCGUUGUCGacuUCGaCGg -3'
miRNA:   3'- -GGGcUUGCGGUuGUAGCAGU---AGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 25022 0.69 0.831086
Target:  5'- aCCGAGCuGCCGu--UCGUCAUCuacUCGg -3'
miRNA:   3'- gGGCUUG-CGGUuguAGCAGUAGc--AGC- -5'
18968 5' -51.3 NC_004683.1 + 6443 0.69 0.793401
Target:  5'- aCCGGucgaggucaAUGCCgAGCGUCGUCGcgccagCGUCGa -3'
miRNA:   3'- gGGCU---------UGCGG-UUGUAGCAGUa-----GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 56016 0.7 0.773498
Target:  5'- aCCGc-CGCCGACuUCGUCucCGUCGa -3'
miRNA:   3'- gGGCuuGCGGUUGuAGCAGuaGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 46068 0.75 0.492309
Target:  5'- cCCCGGuuCGCCGAggcgcaccgcuacCAggcCGUCAUCGUCGa -3'
miRNA:   3'- -GGGCUu-GCGGUU-------------GUa--GCAGUAGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 12597 0.75 0.514236
Target:  5'- gCCCGGAcuCGCCGACAaccUCGUgCGauUCGUCGc -3'
miRNA:   3'- -GGGCUU--GCGGUUGU---AGCA-GU--AGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 3123 0.73 0.622841
Target:  5'- aCCCGGGCGCCGAUGcCGaUGUgGUCGg -3'
miRNA:   3'- -GGGCUUGCGGUUGUaGCaGUAgCAGC- -5'
18968 5' -51.3 NC_004683.1 + 14363 0.72 0.644944
Target:  5'- cCCCGGACGUgagCAACAUCGgcgaAUCGUg- -3'
miRNA:   3'- -GGGCUUGCG---GUUGUAGCag--UAGCAgc -5'
18968 5' -51.3 NC_004683.1 + 37418 0.71 0.710626
Target:  5'- gCCCGGAUGuCCAACGUCGg-GUCGa-- -3'
miRNA:   3'- -GGGCUUGC-GGUUGUAGCagUAGCagc -5'
18968 5' -51.3 NC_004683.1 + 34341 0.71 0.721367
Target:  5'- gCuuGAugGCCucgGCAUCG-CGUgCGUCGa -3'
miRNA:   3'- -GggCUugCGGu--UGUAGCaGUA-GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 39648 0.7 0.763321
Target:  5'- aCCCGAGgGCCGcuACGUCGagAUgcuuggaaCGUCGg -3'
miRNA:   3'- -GGGCUUgCGGU--UGUAGCagUA--------GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 24721 0.7 0.773498
Target:  5'- aCCGcAACGCCcGCGUCGaCGUCGa-- -3'
miRNA:   3'- gGGC-UUGCGGuUGUAGCaGUAGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.