miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18969 3' -55.8 NC_004683.1 + 25566 0.66 0.729117
Target:  5'- gGCCGcGGUCggcaACGgcACGGCGGcCGUCGc -3'
miRNA:   3'- -UGGUuCCAGa---UGC--UGCUGCCaGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 39707 0.66 0.718606
Target:  5'- -aCAAGGUCUACGGCagccaaucGACGGcgaagaaacgCGCUg -3'
miRNA:   3'- ugGUUCCAGAUGCUG--------CUGCCa---------GCGGu -5'
18969 3' -55.8 NC_004683.1 + 24015 0.66 0.718606
Target:  5'- gGCCAGGGUgacCggccCGACGAugccguCGGcCGCCAc -3'
miRNA:   3'- -UGGUUCCA---Gau--GCUGCU------GCCaGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 5360 0.66 0.708012
Target:  5'- gACCAAGGcCgACGGCGGCuaccuGGU-GCCGu -3'
miRNA:   3'- -UGGUUCCaGaUGCUGCUG-----CCAgCGGU- -5'
18969 3' -55.8 NC_004683.1 + 5974 0.66 0.708012
Target:  5'- gGCCGguGGGUgagGCGagGCGAUGGaCGCCAa -3'
miRNA:   3'- -UGGU--UCCAga-UGC--UGCUGCCaGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 24113 0.66 0.686616
Target:  5'- -gCAAGGUCgACGACGGCaGcCGCg- -3'
miRNA:   3'- ugGUUCCAGaUGCUGCUGcCaGCGgu -5'
18969 3' -55.8 NC_004683.1 + 3864 0.67 0.675837
Target:  5'- cCCAAGGUgcaguuCGACcACGGcCGCCAc -3'
miRNA:   3'- uGGUUCCAgau---GCUGcUGCCaGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 31291 0.67 0.674756
Target:  5'- cACCGGGGguugugcagCUGCGggccguggcggugGCGGCGauGUCGCCGu -3'
miRNA:   3'- -UGGUUCCa--------GAUGC-------------UGCUGC--CAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 53944 0.67 0.674756
Target:  5'- gGCCGAcgaggccGGUCUGcCGAguuuCGACG-UCGCCAa -3'
miRNA:   3'- -UGGUU-------CCAGAU-GCU----GCUGCcAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 55818 0.67 0.672594
Target:  5'- gGCCAu-GUCgugcGCGAacgucaugacggugUGACGGUCGCCGc -3'
miRNA:   3'- -UGGUucCAGa---UGCU--------------GCUGCCAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 5925 0.67 0.654166
Target:  5'- aGCCAGGcGcCUugG-CGGCGGU-GCCGc -3'
miRNA:   3'- -UGGUUC-CaGAugCuGCUGCCAgCGGU- -5'
18969 3' -55.8 NC_004683.1 + 42712 0.67 0.643296
Target:  5'- cGCCGAucucGUCgcggGCGuCGucGCGGUCGCCGa -3'
miRNA:   3'- -UGGUUc---CAGa---UGCuGC--UGCCAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 2791 0.67 0.633504
Target:  5'- gGCgCAAGGUCgguuaccucuacacCGAgGGUGGUCGCCAg -3'
miRNA:   3'- -UG-GUUCCAGau------------GCUgCUGCCAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 56856 0.67 0.632416
Target:  5'- gACCucGGUa-GCGGCuGCGGUCGUCGu -3'
miRNA:   3'- -UGGuuCCAgaUGCUGcUGCCAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 16761 0.67 0.632416
Target:  5'- cCCGAGaUCUGCGAgcgguccuUGACGGUCaCCAc -3'
miRNA:   3'- uGGUUCcAGAUGCU--------GCUGCCAGcGGU- -5'
18969 3' -55.8 NC_004683.1 + 54468 0.67 0.621536
Target:  5'- aACCAAGGUCgGCGACGGCuacagcaUCGaCCu -3'
miRNA:   3'- -UGGUUCCAGaUGCUGCUGcc-----AGC-GGu -5'
18969 3' -55.8 NC_004683.1 + 6146 0.68 0.610664
Target:  5'- uGCCGAuacGGUCgGCGAUGACGuaguucuggaaGUUGCCGu -3'
miRNA:   3'- -UGGUU---CCAGaUGCUGCUGC-----------CAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 9211 0.68 0.599811
Target:  5'- gGCUugAAGGUCaguuCGGCGGCGGU-GCCu -3'
miRNA:   3'- -UGG--UUCCAGau--GCUGCUGCCAgCGGu -5'
18969 3' -55.8 NC_004683.1 + 26868 0.68 0.578195
Target:  5'- gAUCGAGGUUgaacucgaUGCuGACGACGG-CGUCAu -3'
miRNA:   3'- -UGGUUCCAG--------AUG-CUGCUGCCaGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 21339 0.68 0.57389
Target:  5'- uACCGAGGUCggugccaaacaGGcCGGCGGUaGCCAg -3'
miRNA:   3'- -UGGUUCCAGaug--------CU-GCUGCCAgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.