miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18970 3' -55.5 NC_004683.1 + 12198 0.66 0.721984
Target:  5'- uGCGAUCCCGGuuCCUGguGCGauucccACGCCc -3'
miRNA:   3'- -UGUUGGGGCU--GGGCguUGCgu----UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 46281 0.66 0.711386
Target:  5'- gGCAACCagcgucccgaugUUGACCgGCuGACGCGGC-CCg -3'
miRNA:   3'- -UGUUGG------------GGCUGGgCG-UUGCGUUGuGG- -5'
18970 3' -55.5 NC_004683.1 + 30754 0.66 0.731448
Target:  5'- gACGGCCgCUGucgaCCGCAccgGCGCAccgucggcugcgcACGCCg -3'
miRNA:   3'- -UGUUGG-GGCug--GGCGU---UGCGU-------------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 20407 0.66 0.711386
Target:  5'- gGCGcACCCgGGgCgGcCAACGgCGGCACCg -3'
miRNA:   3'- -UGU-UGGGgCUgGgC-GUUGC-GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 23997 0.66 0.742908
Target:  5'- gACGAUgCCGucggccGCCaCGCcuACGCGGCGCUg -3'
miRNA:   3'- -UGUUGgGGC------UGG-GCGu-UGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 51851 0.66 0.711386
Target:  5'- cACGGCggCCGACCgCGCucgaGCuGCACCa -3'
miRNA:   3'- -UGUUGg-GGCUGG-GCGuug-CGuUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 53914 0.66 0.70071
Target:  5'- gGCGAUCCCG-CCCGagAugGCAAaggacaugGCCg -3'
miRNA:   3'- -UGUUGGGGCuGGGCg-UugCGUUg-------UGG- -5'
18970 3' -55.5 NC_004683.1 + 13025 0.66 0.721984
Target:  5'- -uGGCCCCGGCgacuuCCGgGugGgauuCAACGCCa -3'
miRNA:   3'- ugUUGGGGCUG-----GGCgUugC----GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 23696 0.66 0.732495
Target:  5'- gACGGguUCUCGACguuCCGCcGCGgCGGCACCg -3'
miRNA:   3'- -UGUU--GGGGCUG---GGCGuUGC-GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 49019 0.66 0.711386
Target:  5'- uCAAgCCCGACCgGgaAGCGCucGCACg -3'
miRNA:   3'- uGUUgGGGCUGGgCg-UUGCGu-UGUGg -5'
18970 3' -55.5 NC_004683.1 + 5692 0.66 0.742907
Target:  5'- -aGGCCgUGACCCucaCGAC-CGGCACCg -3'
miRNA:   3'- ugUUGGgGCUGGGc--GUUGcGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 1071 0.66 0.697495
Target:  5'- -gGugCCUGACCCGCAguuGCugauuggcucgucgGCAugccACGCCg -3'
miRNA:   3'- ugUugGGGCUGGGCGU---UG--------------CGU----UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 21737 0.66 0.711386
Target:  5'- uCAACCCa-GCCCGCGG-GCAG-ACCg -3'
miRNA:   3'- uGUUGGGgcUGGGCGUUgCGUUgUGG- -5'
18970 3' -55.5 NC_004683.1 + 45903 0.66 0.721984
Target:  5'- -uGACCCCG-CCgGUuccCGC-GCACCg -3'
miRNA:   3'- ugUUGGGGCuGGgCGuu-GCGuUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 24438 0.66 0.721984
Target:  5'- -aAGCCgCCGGCCaccgaGCGcCGCAagaucuggaucuACACCg -3'
miRNA:   3'- ugUUGG-GGCUGGg----CGUuGCGU------------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 4095 0.66 0.721984
Target:  5'- ---cCCCCGACggcaagaucauCCGCGACgaGCAGCAgCu -3'
miRNA:   3'- uguuGGGGCUG-----------GGCGUUG--CGUUGUgG- -5'
18970 3' -55.5 NC_004683.1 + 6123 0.66 0.741871
Target:  5'- cCAACCgCCGGCCCaacggGUcGCGCGGCugguucgcguacuACCg -3'
miRNA:   3'- uGUUGG-GGCUGGG-----CGuUGCGUUG-------------UGG- -5'
18970 3' -55.5 NC_004683.1 + 16413 0.66 0.732495
Target:  5'- uCGAUCCUGACCgCGaucgAGCGCGACGg- -3'
miRNA:   3'- uGUUGGGGCUGG-GCg---UUGCGUUGUgg -5'
18970 3' -55.5 NC_004683.1 + 21925 0.66 0.711386
Target:  5'- gGCAAUCCCGGCaauCCGCccggcgGugGCGGgcggcCGCCg -3'
miRNA:   3'- -UGUUGGGGCUG---GGCG------UugCGUU-----GUGG- -5'
18970 3' -55.5 NC_004683.1 + 2392 0.66 0.70071
Target:  5'- aGCAgacACUggCCGGCCCGuCGACGgAauugGCGCCu -3'
miRNA:   3'- -UGU---UGG--GGCUGGGC-GUUGCgU----UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.