miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18970 3' -55.5 NC_004683.1 + 55298 1.1 0.000841
Target:  5'- aACAACCCCGACCCGCAACGCAACACCc -3'
miRNA:   3'- -UGUUGGGGCUGGGCGUUGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 56499 0.8 0.115314
Target:  5'- cGCAugCCCGGCcgcaCCGCAugGCAgguaggcGCACCg -3'
miRNA:   3'- -UGUugGGGCUG----GGCGUugCGU-------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 24321 0.8 0.125693
Target:  5'- aGCGACgCCGAguucaCCCGCGagAUGCAACGCCg -3'
miRNA:   3'- -UGUUGgGGCU-----GGGCGU--UGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 41181 0.8 0.129222
Target:  5'- -aGGCCCCGGCCguggcaGCGGCGCGGgGCCg -3'
miRNA:   3'- ugUUGGGGCUGGg-----CGUUGCGUUgUGG- -5'
18970 3' -55.5 NC_004683.1 + 50378 0.78 0.152379
Target:  5'- cGCuGCCCCGAcuguggcuggcaCCCGCGuACGCAgggGCACCa -3'
miRNA:   3'- -UGuUGGGGCU------------GGGCGU-UGCGU---UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 21002 0.78 0.165321
Target:  5'- --cGCCgaCCGuCCCGCAGCGaCAGCACCg -3'
miRNA:   3'- uguUGG--GGCuGGGCGUUGC-GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 27944 0.78 0.17449
Target:  5'- uACGGCCCCuGCCuCGCcGgGCGGCGCCa -3'
miRNA:   3'- -UGUUGGGGcUGG-GCGuUgCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 40403 0.77 0.184109
Target:  5'- gACGAgCUCGACCUGCcGCGCucCACCg -3'
miRNA:   3'- -UGUUgGGGCUGGGCGuUGCGuuGUGG- -5'
18970 3' -55.5 NC_004683.1 + 42659 0.77 0.184109
Target:  5'- cCGGCCCCGACcgCCGCGGCGCGcucgGCCu -3'
miRNA:   3'- uGUUGGGGCUG--GGCGUUGCGUug--UGG- -5'
18970 3' -55.5 NC_004683.1 + 55503 0.77 0.191118
Target:  5'- cCAACCCCGACgUGCAAUGgguguggugcgucgaCGGCACCg -3'
miRNA:   3'- uGUUGGGGCUGgGCGUUGC---------------GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 56890 0.76 0.204757
Target:  5'- ---cCCCCGACCUGCGccgauGCaGCGGCACCc -3'
miRNA:   3'- uguuGGGGCUGGGCGU-----UG-CGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 52241 0.76 0.204757
Target:  5'- gGCGACCCgGGCC---GGCGCGGCACCa -3'
miRNA:   3'- -UGUUGGGgCUGGgcgUUGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 33437 0.76 0.227383
Target:  5'- gACGguACCCCaccgagaaagaGGCCCGCGACGCGcuCGCCc -3'
miRNA:   3'- -UGU--UGGGG-----------CUGGGCGUUGCGUu-GUGG- -5'
18970 3' -55.5 NC_004683.1 + 46670 0.75 0.245712
Target:  5'- cGCGGCCCuCGACCgGCAccaGCaGCGGCAgCCa -3'
miRNA:   3'- -UGUUGGG-GCUGGgCGU---UG-CGUUGU-GG- -5'
18970 3' -55.5 NC_004683.1 + 24153 0.75 0.251444
Target:  5'- gGCGAUCgCCGACCUGCAcaaggccGCGuCAugACCg -3'
miRNA:   3'- -UGUUGG-GGCUGGGCGU-------UGC-GUugUGG- -5'
18970 3' -55.5 NC_004683.1 + 499 0.75 0.263241
Target:  5'- cCAGCCaCCGccugcgccaucaccGCCCGCAGCucuuucgacaGCGACGCCa -3'
miRNA:   3'- uGUUGG-GGC--------------UGGGCGUUG----------CGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 54172 0.75 0.26525
Target:  5'- cGCAuugcACCUCGACUCGCcgguGACGCuccACACCg -3'
miRNA:   3'- -UGU----UGGGGCUGGGCG----UUGCGu--UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 5220 0.74 0.286028
Target:  5'- uCGACCCUGGCCCGUcagugccuggcGACGUcguCGCCg -3'
miRNA:   3'- uGUUGGGGCUGGGCG-----------UUGCGuu-GUGG- -5'
18970 3' -55.5 NC_004683.1 + 39984 0.74 0.299839
Target:  5'- aACAGCUcguagaccgucguCCGgccaACCCGCAGCGCAucCGCCg -3'
miRNA:   3'- -UGUUGG-------------GGC----UGGGCGUUGCGUu-GUGG- -5'
18970 3' -55.5 NC_004683.1 + 13466 0.74 0.307313
Target:  5'- gGCcACCCUGGCCCaugaaugGCAGCGUGcCGCCg -3'
miRNA:   3'- -UGuUGGGGCUGGG-------CGUUGCGUuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.