Results 1 - 20 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18970 | 3' | -55.5 | NC_004683.1 | + | 3946 | 0.72 | 0.390697 |
Target: 5'- uCGACCCCGugCuCGCAcccgaGgGCGGCGCg -3' miRNA: 3'- uGUUGGGGCugG-GCGU-----UgCGUUGUGg -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 17321 | 0.74 | 0.308068 |
Target: 5'- --uGCCCCGuacgGCCCGUAugcguugggGCGCGACAUCu -3' miRNA: 3'- uguUGGGGC----UGGGCGU---------UGCGUUGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 4290 | 0.73 | 0.315697 |
Target: 5'- gACGGCUCCauGACCCcgaGCAGCGCAAguugcuCGCCg -3' miRNA: 3'- -UGUUGGGG--CUGGG---CGUUGCGUU------GUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 29279 | 0.73 | 0.323469 |
Target: 5'- -aGACCCCGACCCcUGACGaguuaGGCACUg -3' miRNA: 3'- ugUUGGGGCUGGGcGUUGCg----UUGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 17765 | 0.73 | 0.334587 |
Target: 5'- gGCGACCCgGGCCCGUggaccgagAuccucgaagaggucaACGUGACGCCg -3' miRNA: 3'- -UGUUGGGgCUGGGCG--------U---------------UGCGUUGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 17220 | 0.72 | 0.355968 |
Target: 5'- cCGACCCCGGcgccCCCGUAcaACGuCGAgGCCa -3' miRNA: 3'- uGUUGGGGCU----GGGCGU--UGC-GUUgUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 55007 | 0.72 | 0.359342 |
Target: 5'- gGCGGCCUCGAuCCCGCauucggcggcuggggAugGgAACACCc -3' miRNA: 3'- -UGUUGGGGCU-GGGCG---------------UugCgUUGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 43736 | 0.72 | 0.373058 |
Target: 5'- uGCaAACCgaGAUCCGCAagucGCGCAACGCg -3' miRNA: 3'- -UG-UUGGggCUGGGCGU----UGCGUUGUGg -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 4852 | 0.72 | 0.385348 |
Target: 5'- gACAGCCUCGuaaaccacaugagccGCCUGgAGCGCGcCGCCg -3' miRNA: 3'- -UGUUGGGGC---------------UGGGCgUUGCGUuGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 5220 | 0.74 | 0.286028 |
Target: 5'- uCGACCCUGGCCCGUcagugccuggcGACGUcguCGCCg -3' miRNA: 3'- uGUUGGGGCUGGGCG-----------UUGCGuu-GUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 24153 | 0.75 | 0.251444 |
Target: 5'- gGCGAUCgCCGACCUGCAcaaggccGCGuCAugACCg -3' miRNA: 3'- -UGUUGG-GGCUGGGCGU-------UGC-GUugUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 56890 | 0.76 | 0.204757 |
Target: 5'- ---cCCCCGACCUGCGccgauGCaGCGGCACCc -3' miRNA: 3'- uguuGGGGCUGGGCGU-----UG-CGUUGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 56499 | 0.8 | 0.115314 |
Target: 5'- cGCAugCCCGGCcgcaCCGCAugGCAgguaggcGCACCg -3' miRNA: 3'- -UGUugGGGCUG----GGCGUugCGU-------UGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 24321 | 0.8 | 0.125693 |
Target: 5'- aGCGACgCCGAguucaCCCGCGagAUGCAACGCCg -3' miRNA: 3'- -UGUUGgGGCU-----GGGCGU--UGCGUUGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 50378 | 0.78 | 0.152379 |
Target: 5'- cGCuGCCCCGAcuguggcuggcaCCCGCGuACGCAgggGCACCa -3' miRNA: 3'- -UGuUGGGGCU------------GGGCGU-UGCGU---UGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 21002 | 0.78 | 0.165321 |
Target: 5'- --cGCCgaCCGuCCCGCAGCGaCAGCACCg -3' miRNA: 3'- uguUGG--GGCuGGGCGUUGC-GUUGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 27944 | 0.78 | 0.17449 |
Target: 5'- uACGGCCCCuGCCuCGCcGgGCGGCGCCa -3' miRNA: 3'- -UGUUGGGGcUGG-GCGuUgCGUUGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 40403 | 0.77 | 0.184109 |
Target: 5'- gACGAgCUCGACCUGCcGCGCucCACCg -3' miRNA: 3'- -UGUUgGGGCUGGGCGuUGCGuuGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 55503 | 0.77 | 0.191118 |
Target: 5'- cCAACCCCGACgUGCAAUGgguguggugcgucgaCGGCACCg -3' miRNA: 3'- uGUUGGGGCUGgGCGUUGC---------------GUUGUGG- -5' |
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18970 | 3' | -55.5 | NC_004683.1 | + | 52241 | 0.76 | 0.204757 |
Target: 5'- gGCGACCCgGGCC---GGCGCGGCACCa -3' miRNA: 3'- -UGUUGGGgCUGGgcgUUGCGUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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