miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 5' -58.7 NC_004683.1 + 55744 1.05 0.000726
Target:  5'- gUUCGCGCACGACAUGGCCGCAGACCAc -3'
miRNA:   3'- -AAGCGCGUGCUGUACCGGCGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 53640 0.68 0.360908
Target:  5'- -cCGC-CGCGACcUGGCCGCGG-CUg -3'
miRNA:   3'- aaGCGcGUGCUGuACCGGCGUCuGGu -5'
18972 5' -58.7 NC_004683.1 + 53573 0.66 0.492162
Target:  5'- -aCGC-CGCGGCAgacgccGGCCGCAccgccGGCCGc -3'
miRNA:   3'- aaGCGcGUGCUGUa-----CCGGCGU-----CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 53439 0.71 0.243316
Target:  5'- -aCGCGgACGACAaccUGGCCGCcgaGGGCUu -3'
miRNA:   3'- aaGCGCgUGCUGU---ACCGGCG---UCUGGu -5'
18972 5' -58.7 NC_004683.1 + 53283 0.67 0.423502
Target:  5'- gUCGUGCucACGGCGUGcgcGCUGCAGggauuGCCAg -3'
miRNA:   3'- aAGCGCG--UGCUGUAC---CGGCGUC-----UGGU- -5'
18972 5' -58.7 NC_004683.1 + 53127 0.66 0.501368
Target:  5'- aUCGCGUGCGACAUuGCgagauuagcacagCGCAGAgCCu -3'
miRNA:   3'- aAGCGCGUGCUGUAcCG-------------GCGUCU-GGu -5'
18972 5' -58.7 NC_004683.1 + 53021 0.67 0.452248
Target:  5'- -aCGUGCGCGAguUGGUacCGGGCCAc -3'
miRNA:   3'- aaGCGCGUGCUguACCGgcGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 52954 0.68 0.369446
Target:  5'- cUCGCGCACGuGCgugagGUGGCCagaaagaagcGCAGGCgCAa -3'
miRNA:   3'- aAGCGCGUGC-UG-----UACCGG----------CGUCUG-GU- -5'
18972 5' -58.7 NC_004683.1 + 51813 0.68 0.369446
Target:  5'- --gGCgGCGCGGCAcUGGUCGCGG-CCGu -3'
miRNA:   3'- aagCG-CGUGCUGU-ACCGGCGUCuGGU- -5'
18972 5' -58.7 NC_004683.1 + 51127 0.68 0.360908
Target:  5'- -cCG-GCGCGAag-GGCCGCAaGGCCGa -3'
miRNA:   3'- aaGCgCGUGCUguaCCGGCGU-CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 50958 0.69 0.352508
Target:  5'- gUCGCGCACaGCGcuccGGCCGCAcccGCCGc -3'
miRNA:   3'- aAGCGCGUGcUGUa---CCGGCGUc--UGGU- -5'
18972 5' -58.7 NC_004683.1 + 48876 0.71 0.237137
Target:  5'- aUCGCGUACcaguggccaGGCAUGGCUGCuGGuCCAg -3'
miRNA:   3'- aAGCGCGUG---------CUGUACCGGCGuCU-GGU- -5'
18972 5' -58.7 NC_004683.1 + 48822 0.66 0.471992
Target:  5'- gUUCGCGU-CGGCAagaaacgcgcUGGCCGCGaacucgacGGCCGc -3'
miRNA:   3'- -AAGCGCGuGCUGU----------ACCGGCGU--------CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 48276 0.67 0.462064
Target:  5'- -cUGCGCAgCGAaucacCAUGGCCGCu-GCCGa -3'
miRNA:   3'- aaGCGCGU-GCU-----GUACCGGCGucUGGU- -5'
18972 5' -58.7 NC_004683.1 + 47422 0.66 0.512721
Target:  5'- gUCGCgGCGCGGCAgcgcaaGGCCG-GGACgAa -3'
miRNA:   3'- aAGCG-CGUGCUGUa-----CCGGCgUCUGgU- -5'
18972 5' -58.7 NC_004683.1 + 47024 0.75 0.128045
Target:  5'- -gCGCGCACGAUgAUGGCCaaCGGGCCGa -3'
miRNA:   3'- aaGCGCGUGCUG-UACCGGc-GUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 45546 0.68 0.369446
Target:  5'- gUCGCGCGCGAgaaGUGcuGCgGCGGugCGg -3'
miRNA:   3'- aAGCGCGUGCUg--UAC--CGgCGUCugGU- -5'
18972 5' -58.7 NC_004683.1 + 45479 0.72 0.219388
Target:  5'- cUCGCGCGCGACGcgccCCGCAccGACCGg -3'
miRNA:   3'- aAGCGCGUGCUGUacc-GGCGU--CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 44845 0.69 0.320307
Target:  5'- cUCGCGCAaucgcCGugGUGGCCcgGCcuggAGGCCGa -3'
miRNA:   3'- aAGCGCGU-----GCugUACCGG--CG----UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 43025 0.77 0.105397
Target:  5'- --gGCGUACGACAUGGCCGaaaaGGugCGu -3'
miRNA:   3'- aagCGCGUGCUGUACCGGCg---UCugGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.