miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 3' -58.1 NC_004683.1 + 56050 1.12 0.00037
Target:  5'- cACUCGGUUGCGAGGCCAACCACCGCCg -3'
miRNA:   3'- -UGAGCCAACGCUCCGGUUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 9113 0.83 0.045098
Target:  5'- aGCUCGGaaaGCGAGGC--ACCGCCGCCg -3'
miRNA:   3'- -UGAGCCaa-CGCUCCGguUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 24333 0.8 0.079495
Target:  5'- gACUCGGcguagGCGcGGGCCcACCGCUGCCa -3'
miRNA:   3'- -UGAGCCaa---CGC-UCCGGuUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 8156 0.77 0.120546
Target:  5'- cGCUCGGcgcCGAGGCCGcgaagGCCGCgGCCa -3'
miRNA:   3'- -UGAGCCaacGCUCCGGU-----UGGUGgCGG- -5'
18973 3' -58.1 NC_004683.1 + 8460 0.76 0.138159
Target:  5'- --gCGGcccgcGCGGGGCCGAUCACCGUCa -3'
miRNA:   3'- ugaGCCaa---CGCUCCGGUUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 41806 0.74 0.193412
Target:  5'- gGCUCGGgcaggucucgcgGCGAGG-UGACCACCGCg -3'
miRNA:   3'- -UGAGCCaa----------CGCUCCgGUUGGUGGCGg -5'
18973 3' -58.1 NC_004683.1 + 6278 0.74 0.20115
Target:  5'- cCUCGGUggcUGaccccaacggaaacgGAGGCCAACCAUgGCCa -3'
miRNA:   3'- uGAGCCA---ACg--------------CUCCGGUUGGUGgCGG- -5'
18973 3' -58.1 NC_004683.1 + 52676 0.74 0.205922
Target:  5'- uACUCGGgugGCucGGGCCGguugACCACgCGCCg -3'
miRNA:   3'- -UGAGCCaa-CGc-UCCGGU----UGGUG-GCGG- -5'
18973 3' -58.1 NC_004683.1 + 16751 0.74 0.211338
Target:  5'- uCUCGGUggcucacucgGCGAcaucuuuuGGCCGAUCAuCCGCCa -3'
miRNA:   3'- uGAGCCAa---------CGCU--------CCGGUUGGU-GGCGG- -5'
18973 3' -58.1 NC_004683.1 + 7065 0.73 0.239062
Target:  5'- cGCUCGGUcucgacgucuggGCGcgccGGCCGacgagcugcACCACCGCCc -3'
miRNA:   3'- -UGAGCCAa-----------CGCu---CCGGU---------UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 8590 0.73 0.240281
Target:  5'- -gUCGGUUGuCGAcGGUCGuguaGCCACCaGCCg -3'
miRNA:   3'- ugAGCCAAC-GCU-CCGGU----UGGUGG-CGG- -5'
18973 3' -58.1 NC_004683.1 + 28659 0.72 0.263772
Target:  5'- cGCUCGGcgUGCcgucuccuaccgcgGAGGCCugcCCAgCGCCg -3'
miRNA:   3'- -UGAGCCa-ACG--------------CUCCGGuu-GGUgGCGG- -5'
18973 3' -58.1 NC_004683.1 + 23944 0.72 0.265757
Target:  5'- uCUCGGUcaGCG-GGCCGAagUCGCCGUCg -3'
miRNA:   3'- uGAGCCAa-CGCuCCGGUU--GGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 26342 0.72 0.279295
Target:  5'- -gUCGGcggUGCGAGGCCGcguugGCCcuCCGCg -3'
miRNA:   3'- ugAGCCa--ACGCUCCGGU-----UGGu-GGCGg -5'
18973 3' -58.1 NC_004683.1 + 33429 0.71 0.286267
Target:  5'- aGCUCGuaccGCaccacuGGCCGACCGCCGCUa -3'
miRNA:   3'- -UGAGCcaa-CGcu----CCGGUUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 25169 0.71 0.286267
Target:  5'- gGCUCGGUcaucggcggcgUGCucGGGGCCAaggacaagccaaACC-CCGCCc -3'
miRNA:   3'- -UGAGCCA-----------ACG--CUCCGGU------------UGGuGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 22035 0.71 0.286267
Target:  5'- gGC-CGGUgaacuCGGcGGCCGcaccGCCACCGCCg -3'
miRNA:   3'- -UGaGCCAac---GCU-CCGGU----UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 46798 0.71 0.286267
Target:  5'- uGCgCGGcgGCGGGuCCAAgCACCGCCc -3'
miRNA:   3'- -UGaGCCaaCGCUCcGGUUgGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 44890 0.71 0.315527
Target:  5'- aGCUCGGccaggcgcaacuUgaacGCGAucgcgggcacgcGGCCcGCCGCCGCCg -3'
miRNA:   3'- -UGAGCC------------Aa---CGCU------------CCGGuUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 30637 0.71 0.320873
Target:  5'- gACUCGGacUUGCGGGaguGCCcggcacccgaacguAACgGCCGCCa -3'
miRNA:   3'- -UGAGCC--AACGCUC---CGG--------------UUGgUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.