miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 3' -58.1 NC_004683.1 + 23985 0.68 0.463839
Target:  5'- cCUCGGc-GCGAucaCCAcGCCACCGCCc -3'
miRNA:   3'- uGAGCCaaCGCUcc-GGU-UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 30416 0.7 0.346988
Target:  5'- --aUGGUgGCGcaAGGCCAGaaGCCGCCa -3'
miRNA:   3'- ugaGCCAaCGC--UCCGGUUggUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 47692 0.69 0.389375
Target:  5'- -aUCGGguugcccgaUUGCGGGGUguGCUgugACCGCCg -3'
miRNA:   3'- ugAGCC---------AACGCUCCGguUGG---UGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 5833 0.69 0.398251
Target:  5'- aGCUCGcc-GCGcGGC--ACCGCCGCCa -3'
miRNA:   3'- -UGAGCcaaCGCuCCGguUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 13730 0.69 0.416385
Target:  5'- uGCgCGGccUGCGcuGCCAAaCACCGCCg -3'
miRNA:   3'- -UGaGCCa-ACGCucCGGUUgGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 31899 0.69 0.420072
Target:  5'- gGCUCGGgccggugcagccaGCGGGGCgAGCUgguCUGCCa -3'
miRNA:   3'- -UGAGCCaa-----------CGCUCCGgUUGGu--GGCGG- -5'
18973 3' -58.1 NC_004683.1 + 12380 0.68 0.435015
Target:  5'- aGCUCGaagcCGAGGgCAacGCCACCGCUc -3'
miRNA:   3'- -UGAGCcaacGCUCCgGU--UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 22193 0.68 0.454118
Target:  5'- ---gGGUUGCGcgGGGCgGGCgacgaGCCGCCa -3'
miRNA:   3'- ugagCCAACGC--UCCGgUUGg----UGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 12009 0.68 0.457993
Target:  5'- aGC-CGGUaucgacGCG-GGCCAgcgcgcccgcgcgggGCUACCGCCg -3'
miRNA:   3'- -UGaGCCAa-----CGCuCCGGU---------------UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 13602 0.71 0.323186
Target:  5'- -aUCGGcuaUGCG-GGCCAGCuCGCCGgCa -3'
miRNA:   3'- ugAGCCa--ACGCuCCGGUUG-GUGGCgG- -5'
18973 3' -58.1 NC_004683.1 + 9399 0.71 0.323186
Target:  5'- cAUUCGGcccgGgGAGGCCG-CCGCCcaaGCCa -3'
miRNA:   3'- -UGAGCCaa--CgCUCCGGUuGGUGG---CGG- -5'
18973 3' -58.1 NC_004683.1 + 33429 0.71 0.286267
Target:  5'- aGCUCGuaccGCaccacuGGCCGACCGCCGCUa -3'
miRNA:   3'- -UGAGCcaa-CGcu----CCGGUUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 9113 0.83 0.045098
Target:  5'- aGCUCGGaaaGCGAGGC--ACCGCCGCCg -3'
miRNA:   3'- -UGAGCCaa-CGCUCCGguUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 8156 0.77 0.120546
Target:  5'- cGCUCGGcgcCGAGGCCGcgaagGCCGCgGCCa -3'
miRNA:   3'- -UGAGCCaacGCUCCGGU-----UGGUGgCGG- -5'
18973 3' -58.1 NC_004683.1 + 6278 0.74 0.20115
Target:  5'- cCUCGGUggcUGaccccaacggaaacgGAGGCCAACCAUgGCCa -3'
miRNA:   3'- uGAGCCA---ACg--------------CUCCGGUUGGUGgCGG- -5'
18973 3' -58.1 NC_004683.1 + 16751 0.74 0.211338
Target:  5'- uCUCGGUggcucacucgGCGAcaucuuuuGGCCGAUCAuCCGCCa -3'
miRNA:   3'- uGAGCCAa---------CGCU--------CCGGUUGGU-GGCGG- -5'
18973 3' -58.1 NC_004683.1 + 28659 0.72 0.263772
Target:  5'- cGCUCGGcgUGCcgucuccuaccgcgGAGGCCugcCCAgCGCCg -3'
miRNA:   3'- -UGAGCCa-ACG--------------CUCCGGuu-GGUgGCGG- -5'
18973 3' -58.1 NC_004683.1 + 26342 0.72 0.279295
Target:  5'- -gUCGGcggUGCGAGGCCGcguugGCCcuCCGCg -3'
miRNA:   3'- ugAGCCa--ACGCUCCGGU-----UGGu-GGCGg -5'
18973 3' -58.1 NC_004683.1 + 46798 0.71 0.286267
Target:  5'- uGCgCGGcgGCGGGuCCAAgCACCGCCc -3'
miRNA:   3'- -UGaGCCaaCGCUCcGGUUgGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 25169 0.71 0.286267
Target:  5'- gGCUCGGUcaucggcggcgUGCucGGGGCCAaggacaagccaaACC-CCGCCc -3'
miRNA:   3'- -UGAGCCA-----------ACG--CUCCGGU------------UGGuGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.