miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 3' -58.1 NC_004683.1 + 513 0.69 0.407254
Target:  5'- cCUCGaccGCcgcGCCAGCCACCGCCu -3'
miRNA:   3'- uGAGCcaaCGcucCGGUUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 2876 0.68 0.451223
Target:  5'- cCUCGGUguaGAGguaaccgaccuugcGCCAaccgaguugGCCGCCGCCg -3'
miRNA:   3'- uGAGCCAacgCUC--------------CGGU---------UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 3383 0.66 0.576793
Target:  5'- gUUCGGUUGUGGuacgacGCCGACgACgUGCCg -3'
miRNA:   3'- uGAGCCAACGCUc-----CGGUUGgUG-GCGG- -5'
18973 3' -58.1 NC_004683.1 + 4220 0.66 0.555601
Target:  5'- -aUCGGgccggUGaCGuGGCCGGCCuaCGCCg -3'
miRNA:   3'- ugAGCCa----AC-GCuCCGGUUGGugGCGG- -5'
18973 3' -58.1 NC_004683.1 + 5833 0.69 0.398251
Target:  5'- aGCUCGcc-GCGcGGC--ACCGCCGCCa -3'
miRNA:   3'- -UGAGCcaaCGCuCCGguUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 6278 0.74 0.20115
Target:  5'- cCUCGGUggcUGaccccaacggaaacgGAGGCCAACCAUgGCCa -3'
miRNA:   3'- uGAGCCA---ACg--------------CUCCGGUUGGUGgCGG- -5'
18973 3' -58.1 NC_004683.1 + 7065 0.73 0.239062
Target:  5'- cGCUCGGUcucgacgucuggGCGcgccGGCCGacgagcugcACCACCGCCc -3'
miRNA:   3'- -UGAGCCAa-----------CGCu---CCGGU---------UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 7439 0.66 0.598158
Target:  5'- uGCUCGGUgccGuCGuAGaCCAACuCACCGUCc -3'
miRNA:   3'- -UGAGCCAa--C-GC-UCcGGUUG-GUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 7816 0.66 0.573601
Target:  5'- aACUCGacgaagUGCGcauaccaggcuuucGGGCCGaacacGCCACgGCCg -3'
miRNA:   3'- -UGAGCca----ACGC--------------UCCGGU-----UGGUGgCGG- -5'
18973 3' -58.1 NC_004683.1 + 8156 0.77 0.120546
Target:  5'- cGCUCGGcgcCGAGGCCGcgaagGCCGCgGCCa -3'
miRNA:   3'- -UGAGCCaacGCUCCGGU-----UGGUGgCGG- -5'
18973 3' -58.1 NC_004683.1 + 8460 0.76 0.138159
Target:  5'- --gCGGcccgcGCGGGGCCGAUCACCGUCa -3'
miRNA:   3'- ugaGCCaa---CGCUCCGGUUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 8590 0.73 0.240281
Target:  5'- -gUCGGUUGuCGAcGGUCGuguaGCCACCaGCCg -3'
miRNA:   3'- ugAGCCAAC-GCU-CCGGU----UGGUGG-CGG- -5'
18973 3' -58.1 NC_004683.1 + 8845 0.66 0.598158
Target:  5'- uGCUCGGccGCGAcgaggGGCCGuuGCCcucaccgaACgCGCCg -3'
miRNA:   3'- -UGAGCCaaCGCU-----CCGGU--UGG--------UG-GCGG- -5'
18973 3' -58.1 NC_004683.1 + 8949 0.67 0.513969
Target:  5'- cGCU-GGUggagcugcccgGCGAGGCCGACggauuaGCCaGCCg -3'
miRNA:   3'- -UGAgCCAa----------CGCUCCGGUUGg-----UGG-CGG- -5'
18973 3' -58.1 NC_004683.1 + 8978 0.68 0.435015
Target:  5'- ---aGGUUGUu-GGCCAGCCGCugaauCGCCg -3'
miRNA:   3'- ugagCCAACGcuCCGGUUGGUG-----GCGG- -5'
18973 3' -58.1 NC_004683.1 + 9113 0.83 0.045098
Target:  5'- aGCUCGGaaaGCGAGGC--ACCGCCGCCg -3'
miRNA:   3'- -UGAGCCaa-CGCUCCGguUGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 9399 0.71 0.323186
Target:  5'- cAUUCGGcccgGgGAGGCCG-CCGCCcaaGCCa -3'
miRNA:   3'- -UGAGCCaa--CgCUCCGGUuGGUGG---CGG- -5'
18973 3' -58.1 NC_004683.1 + 9468 0.66 0.566171
Target:  5'- cCUCGGcgacgGCGAGGCguGggaGCUGCCg -3'
miRNA:   3'- uGAGCCaa---CGCUCCGguUgg-UGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 10423 0.66 0.555601
Target:  5'- -aUgGGgcGCGGGauGCCGACCagGCCGUCa -3'
miRNA:   3'- ugAgCCaaCGCUC--CGGUUGG--UGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 10856 0.67 0.513969
Target:  5'- cCUCGGagugaUGgGuGGCCGAUUGCuCGCCa -3'
miRNA:   3'- uGAGCCa----ACgCuCCGGUUGGUG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.