miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18975 3' -53.7 NC_004683.1 + 25337 0.66 0.809869
Target:  5'- -aGCAGUGCGAccaGCUGCGggauguUGGuCAGCa -3'
miRNA:   3'- gcUGUCACGCUag-UGGCGU------ACC-GUUG- -5'
18975 3' -53.7 NC_004683.1 + 8615 0.66 0.809869
Target:  5'- aGGcCGGUGCGGUgGCCGCccuGCAGu -3'
miRNA:   3'- gCU-GUCACGCUAgUGGCGuacCGUUg -5'
18975 3' -53.7 NC_004683.1 + 40220 0.66 0.800195
Target:  5'- -cGCGGUG-GAUCGCaUGCAgauUGGCGAUg -3'
miRNA:   3'- gcUGUCACgCUAGUG-GCGU---ACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 8455 0.66 0.800195
Target:  5'- cCGcGCGGgGcCGAUCACCGuCAggagacGGCGACg -3'
miRNA:   3'- -GC-UGUCaC-GCUAGUGGC-GUa-----CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 31480 0.66 0.790341
Target:  5'- ---uGGUgGCGGUCGCCGCAgugcUGGCc-- -3'
miRNA:   3'- gcugUCA-CGCUAGUGGCGU----ACCGuug -5'
18975 3' -53.7 NC_004683.1 + 52171 0.66 0.790341
Target:  5'- uGACAcGUugcGCGAUCugC-CGUGGUGGCu -3'
miRNA:   3'- gCUGU-CA---CGCUAGugGcGUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 16318 0.66 0.790341
Target:  5'- uGAUcuccgAGUGCGcgCugCGUAUccagGGCGGCa -3'
miRNA:   3'- gCUG-----UCACGCuaGugGCGUA----CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 2743 0.66 0.790341
Target:  5'- gGAUGGUGCGcggCgGCCGCGgcgagcucGGCGGCg -3'
miRNA:   3'- gCUGUCACGCua-G-UGGCGUa-------CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 42142 0.66 0.780317
Target:  5'- gCGGCAGUGUGAcCACCGguUcGcCGAUg -3'
miRNA:   3'- -GCUGUCACGCUaGUGGCguAcC-GUUG- -5'
18975 3' -53.7 NC_004683.1 + 52512 0.66 0.770135
Target:  5'- aCGuGCAG-GCGAUCGCgGCcgacgaGGCGGCc -3'
miRNA:   3'- -GC-UGUCaCGCUAGUGgCGua----CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 18110 0.66 0.770135
Target:  5'- uCGGCAcgaucGCGGUCGCCGCc-GGCAc- -3'
miRNA:   3'- -GCUGUca---CGCUAGUGGCGuaCCGUug -5'
18975 3' -53.7 NC_004683.1 + 21087 0.67 0.759806
Target:  5'- --uCGGUGCuGUCGCUGCGggacggucGGCGACg -3'
miRNA:   3'- gcuGUCACGcUAGUGGCGUa-------CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 41290 0.67 0.759806
Target:  5'- uGGCGGcguccucgGCGGccuUCGCCGCGUcGGCGGg -3'
miRNA:   3'- gCUGUCa-------CGCU---AGUGGCGUA-CCGUUg -5'
18975 3' -53.7 NC_004683.1 + 5897 0.67 0.749343
Target:  5'- cCGGCAGUuCGA-CACC-CAgGGCGGCg -3'
miRNA:   3'- -GCUGUCAcGCUaGUGGcGUaCCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 39838 0.67 0.749343
Target:  5'- gCGugAGUGCGcUCGCCGagaGGUuGCu -3'
miRNA:   3'- -GCugUCACGCuAGUGGCguaCCGuUG- -5'
18975 3' -53.7 NC_004683.1 + 32009 0.67 0.738758
Target:  5'- aGGCGGUGCG---GCUGaCAUGGuCGGCa -3'
miRNA:   3'- gCUGUCACGCuagUGGC-GUACC-GUUG- -5'
18975 3' -53.7 NC_004683.1 + 5554 0.67 0.738757
Target:  5'- gGACAcgccGUGCcacacAUCGCCG-GUGGCGACg -3'
miRNA:   3'- gCUGU----CACGc----UAGUGGCgUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 20677 0.67 0.705293
Target:  5'- cCGAUGGUGCcgauguuGAUCGCCGCAccGCcGCc -3'
miRNA:   3'- -GCUGUCACG-------CUAGUGGCGUacCGuUG- -5'
18975 3' -53.7 NC_004683.1 + 12608 0.68 0.68441
Target:  5'- cCGACAaccucGUGCGAuucgUCGCCaGCcUGGCcGCg -3'
miRNA:   3'- -GCUGU-----CACGCU----AGUGG-CGuACCGuUG- -5'
18975 3' -53.7 NC_004683.1 + 47791 0.68 0.662229
Target:  5'- uCGACucgGCGGUCAcagcacaccCCGCAaucgGGCAACc -3'
miRNA:   3'- -GCUGucaCGCUAGU---------GGCGUa---CCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.