miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18975 3' -53.7 NC_004683.1 + 56495 0.68 0.65109
Target:  5'- cCGACGcaUGCccggccgCACCGCAUGGCAGg -3'
miRNA:   3'- -GCUGUc-ACGcua----GUGGCGUACCGUUg -5'
18975 3' -53.7 NC_004683.1 + 56386 1.1 0.001105
Target:  5'- uCGACAGUGCGAUCACCGCAUGGCAACa -3'
miRNA:   3'- -GCUGUCACGCUAGUGGCGUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 55795 0.71 0.488238
Target:  5'- uGACGGUGUGAcggUCGCCGCcgacgacgccagcguUGaGCAGCg -3'
miRNA:   3'- gCUGUCACGCU---AGUGGCGu--------------AC-CGUUG- -5'
18975 3' -53.7 NC_004683.1 + 55005 0.69 0.595332
Target:  5'- uCGGCGGccuCGAUC-CCGCAUucGGCGGCu -3'
miRNA:   3'- -GCUGUCac-GCUAGuGGCGUA--CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 53702 0.69 0.595332
Target:  5'- gCGGCGG-GCcuGAUCgcGCCGCAgcucGGCGGCg -3'
miRNA:   3'- -GCUGUCaCG--CUAG--UGGCGUa---CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 52512 0.66 0.770135
Target:  5'- aCGuGCAG-GCGAUCGCgGCcgacgaGGCGGCc -3'
miRNA:   3'- -GC-UGUCaCGCUAGUGgCGua----CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 52171 0.66 0.790341
Target:  5'- uGACAcGUugcGCGAUCugC-CGUGGUGGCu -3'
miRNA:   3'- gCUGU-CA---CGCUAGugGcGUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 48507 0.7 0.555609
Target:  5'- uGGCGGUGCGAUCaauGCCGCGccaguguccucgccGGCAc- -3'
miRNA:   3'- gCUGUCACGCUAG---UGGCGUa-------------CCGUug -5'
18975 3' -53.7 NC_004683.1 + 47791 0.68 0.662229
Target:  5'- uCGACucgGCGGUCAcagcacaccCCGCAaucgGGCAACc -3'
miRNA:   3'- -GCUGucaCGCUAGU---------GGCGUa---CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 47573 0.7 0.551238
Target:  5'- gGGCGuccccUGCGAcgGCUGCGUGGCGGCg -3'
miRNA:   3'- gCUGUc----ACGCUagUGGCGUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 43578 0.71 0.476857
Target:  5'- cCGACGGUcuGCGGUCGCgGCAgcccccacgagGGCAGg -3'
miRNA:   3'- -GCUGUCA--CGCUAGUGgCGUa----------CCGUUg -5'
18975 3' -53.7 NC_004683.1 + 42142 0.66 0.780317
Target:  5'- gCGGCAGUGUGAcCACCGguUcGcCGAUg -3'
miRNA:   3'- -GCUGUCACGCUaGUGGCguAcC-GUUG- -5'
18975 3' -53.7 NC_004683.1 + 41290 0.67 0.759806
Target:  5'- uGGCGGcguccucgGCGGccuUCGCCGCGUcGGCGGg -3'
miRNA:   3'- gCUGUCa-------CGCU---AGUGGCGUA-CCGUUg -5'
18975 3' -53.7 NC_004683.1 + 40434 0.68 0.65109
Target:  5'- -cGCAGUGUGggCAcCCGCccGUGGCAuGCa -3'
miRNA:   3'- gcUGUCACGCuaGU-GGCG--UACCGU-UG- -5'
18975 3' -53.7 NC_004683.1 + 40220 0.66 0.800195
Target:  5'- -cGCGGUG-GAUCGCaUGCAgauUGGCGAUg -3'
miRNA:   3'- gcUGUCACgCUAGUG-GCGU---ACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 39838 0.67 0.749343
Target:  5'- gCGugAGUGCGcUCGCCGagaGGUuGCu -3'
miRNA:   3'- -GCugUCACGCuAGUGGCguaCCGuUG- -5'
18975 3' -53.7 NC_004683.1 + 39565 0.7 0.551238
Target:  5'- gCGGC-GUuaGAUCGCCGUAcgcGGCAACg -3'
miRNA:   3'- -GCUGuCAcgCUAGUGGCGUa--CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 36905 0.71 0.518828
Target:  5'- aGACGGUGUGGUCGagaauCCGCAUcgccccGGCggUa -3'
miRNA:   3'- gCUGUCACGCUAGU-----GGCGUA------CCGuuG- -5'
18975 3' -53.7 NC_004683.1 + 32970 0.7 0.540359
Target:  5'- uCGACgAGUGCGGcaacguugcgCACCGUGUGGCccuGCu -3'
miRNA:   3'- -GCUG-UCACGCUa---------GUGGCGUACCGu--UG- -5'
18975 3' -53.7 NC_004683.1 + 32009 0.67 0.738758
Target:  5'- aGGCGGUGCG---GCUGaCAUGGuCGGCa -3'
miRNA:   3'- gCUGUCACGCuagUGGC-GUACC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.