miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18975 5' -55.2 NC_004683.1 + 56421 1.11 0.000784
Target:  5'- gGGGUUGACACCAGCUACACCGUGCCGa -3'
miRNA:   3'- -CCCAACUGUGGUCGAUGUGGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 53579 0.75 0.266497
Target:  5'- cGGcaGACGCCGGCcGCACCGccgGCCGc -3'
miRNA:   3'- cCCaaCUGUGGUCGaUGUGGCa--CGGC- -5'
18975 5' -55.2 NC_004683.1 + 45768 0.74 0.287413
Target:  5'- cGGGUagUGcaGCACCAGCcacaGCGCCGaugUGCCGg -3'
miRNA:   3'- -CCCA--AC--UGUGGUCGa---UGUGGC---ACGGC- -5'
18975 5' -55.2 NC_004683.1 + 19845 0.73 0.333068
Target:  5'- cGGGUUGGCgcgguucaGCCAGCggcaGCACCGgaacggugGCUGa -3'
miRNA:   3'- -CCCAACUG--------UGGUCGa---UGUGGCa-------CGGC- -5'
18975 5' -55.2 NC_004683.1 + 23508 0.73 0.357815
Target:  5'- aGGcGU--ACACCGGCUACACCcaaGCCGa -3'
miRNA:   3'- -CC-CAacUGUGGUCGAUGUGGca-CGGC- -5'
18975 5' -55.2 NC_004683.1 + 41486 0.72 0.392766
Target:  5'- aGGGcc-ACACCAGCcACGCCGccaGCCGa -3'
miRNA:   3'- -CCCaacUGUGGUCGaUGUGGCa--CGGC- -5'
18975 5' -55.2 NC_004683.1 + 5937 0.72 0.401843
Target:  5'- aGGUUGuuCGCCAGCcagGCGCCuuggcggcgGUGCCGc -3'
miRNA:   3'- cCCAACu-GUGGUCGa--UGUGG---------CACGGC- -5'
18975 5' -55.2 NC_004683.1 + 20210 0.71 0.420393
Target:  5'- aGGGaUUGACGCCggauccAGUUGCACCGcguuguaGCCGc -3'
miRNA:   3'- -CCC-AACUGUGG------UCGAUGUGGCa------CGGC- -5'
18975 5' -55.2 NC_004683.1 + 13216 0.7 0.478987
Target:  5'- cGGGUcaucGGCACCGGUccCGCCGaUGCCc -3'
miRNA:   3'- -CCCAa---CUGUGGUCGauGUGGC-ACGGc -5'
18975 5' -55.2 NC_004683.1 + 52437 0.7 0.4994
Target:  5'- cGGGUUGAC-CCGGCccagggcgagUAcCGCCGaacGCCGg -3'
miRNA:   3'- -CCCAACUGuGGUCG----------AU-GUGGCa--CGGC- -5'
18975 5' -55.2 NC_004683.1 + 21710 0.7 0.50975
Target:  5'- cGGG-UGGCGCUGGCaGCGCC--GCCGg -3'
miRNA:   3'- -CCCaACUGUGGUCGaUGUGGcaCGGC- -5'
18975 5' -55.2 NC_004683.1 + 25517 0.7 0.50975
Target:  5'- uGGUUGA----AGCUgACGCCGUGCCGc -3'
miRNA:   3'- cCCAACUguggUCGA-UGUGGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 47044 0.7 0.50975
Target:  5'- cGGGccGACACCAGCgcUACUGcacgGCCa -3'
miRNA:   3'- -CCCaaCUGUGGUCGauGUGGCa---CGGc -5'
18975 5' -55.2 NC_004683.1 + 31296 0.69 0.573496
Target:  5'- gGGGUUGug--CAGCUGCggGCCGUGgCGg -3'
miRNA:   3'- -CCCAACugugGUCGAUG--UGGCACgGC- -5'
18975 5' -55.2 NC_004683.1 + 22532 0.69 0.573496
Target:  5'- aGGGUgaacagcGACACCuccAGCccauacGCGCCGUcGCCGa -3'
miRNA:   3'- -CCCAa------CUGUGG---UCGa-----UGUGGCA-CGGC- -5'
18975 5' -55.2 NC_004683.1 + 22991 0.68 0.595203
Target:  5'- -cGUUGAuCACCAGCgACACCG-GCa- -3'
miRNA:   3'- ccCAACU-GUGGUCGaUGUGGCaCGgc -5'
18975 5' -55.2 NC_004683.1 + 20472 0.68 0.599562
Target:  5'- cGGGUgcgcCGCCAGCUGCcagugcagaucccucGCCG-GCCu -3'
miRNA:   3'- -CCCAacu-GUGGUCGAUG---------------UGGCaCGGc -5'
18975 5' -55.2 NC_004683.1 + 52427 0.68 0.617034
Target:  5'- uGGGUccGGCACCuguGCgagACGcgcggugcucCCGUGCCGc -3'
miRNA:   3'- -CCCAa-CUGUGGu--CGa--UGU----------GGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 26616 0.68 0.638917
Target:  5'- aGGG-UGAuCGCCAGgaACACCGc-CCGg -3'
miRNA:   3'- -CCCaACU-GUGGUCgaUGUGGCacGGC- -5'
18975 5' -55.2 NC_004683.1 + 56669 0.67 0.649854
Target:  5'- uGGUcGAgGCgGGCaagGCGCUGUGCUGg -3'
miRNA:   3'- cCCAaCUgUGgUCGa--UGUGGCACGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.