miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18975 5' -55.2 NC_004683.1 + 56421 1.11 0.000784
Target:  5'- gGGGUUGACACCAGCUACACCGUGCCGa -3'
miRNA:   3'- -CCCAACUGUGGUCGAUGUGGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 46575 0.66 0.74629
Target:  5'- cGGUacUGGCugCcGCUGC-UgGUGCCGg -3'
miRNA:   3'- cCCA--ACUGugGuCGAUGuGgCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 5365 0.66 0.725373
Target:  5'- aGGccGACGgCGGCUACcUgGUGCCGu -3'
miRNA:   3'- cCCaaCUGUgGUCGAUGuGgCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 2132 0.66 0.725373
Target:  5'- uGGUgGugGCgGGCgugGCCGUGCUGg -3'
miRNA:   3'- cCCAaCugUGgUCGaugUGGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 3531 0.67 0.693337
Target:  5'- cGGGUgaucuGCGCCuGCUcaagcACACCG-GCCu -3'
miRNA:   3'- -CCCAac---UGUGGuCGA-----UGUGGCaCGGc -5'
18975 5' -55.2 NC_004683.1 + 4227 0.67 0.693337
Target:  5'- cGGUgacGugGCCGGcCUACGCCGacacuucagUGUCGa -3'
miRNA:   3'- cCCAa--CugUGGUC-GAUGUGGC---------ACGGC- -5'
18975 5' -55.2 NC_004683.1 + 13125 0.67 0.682527
Target:  5'- cGGaggGGCAUCGGCgGgACCGgUGCCGa -3'
miRNA:   3'- cCCaa-CUGUGGUCGaUgUGGC-ACGGC- -5'
18975 5' -55.2 NC_004683.1 + 2922 0.67 0.671669
Target:  5'- uGGcUGACGCCGaucCUGCGCgagauuCGUGCCGa -3'
miRNA:   3'- cCCaACUGUGGUc--GAUGUG------GCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 56669 0.67 0.649854
Target:  5'- uGGUcGAgGCgGGCaagGCGCUGUGCUGg -3'
miRNA:   3'- cCCAaCUgUGgUCGa--UGUGGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 52427 0.68 0.617034
Target:  5'- uGGGUccGGCACCuguGCgagACGcgcggugcucCCGUGCCGc -3'
miRNA:   3'- -CCCAa-CUGUGGu--CGa--UGU----------GGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 53579 0.75 0.266497
Target:  5'- cGGcaGACGCCGGCcGCACCGccgGCCGc -3'
miRNA:   3'- cCCaaCUGUGGUCGaUGUGGCa--CGGC- -5'
18975 5' -55.2 NC_004683.1 + 19845 0.73 0.333068
Target:  5'- cGGGUUGGCgcgguucaGCCAGCggcaGCACCGgaacggugGCUGa -3'
miRNA:   3'- -CCCAACUG--------UGGUCGa---UGUGGCa-------CGGC- -5'
18975 5' -55.2 NC_004683.1 + 23508 0.73 0.357815
Target:  5'- aGGcGU--ACACCGGCUACACCcaaGCCGa -3'
miRNA:   3'- -CC-CAacUGUGGUCGAUGUGGca-CGGC- -5'
18975 5' -55.2 NC_004683.1 + 21710 0.7 0.50975
Target:  5'- cGGG-UGGCGCUGGCaGCGCC--GCCGg -3'
miRNA:   3'- -CCCaACUGUGGUCGaUGUGGcaCGGC- -5'
18975 5' -55.2 NC_004683.1 + 25517 0.7 0.50975
Target:  5'- uGGUUGA----AGCUgACGCCGUGCCGc -3'
miRNA:   3'- cCCAACUguggUCGA-UGUGGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 47044 0.7 0.50975
Target:  5'- cGGGccGACACCAGCgcUACUGcacgGCCa -3'
miRNA:   3'- -CCCaaCUGUGGUCGauGUGGCa---CGGc -5'
18975 5' -55.2 NC_004683.1 + 31296 0.69 0.573496
Target:  5'- gGGGUUGug--CAGCUGCggGCCGUGgCGg -3'
miRNA:   3'- -CCCAACugugGUCGAUG--UGGCACgGC- -5'
18975 5' -55.2 NC_004683.1 + 3807 0.66 0.755559
Target:  5'- aGGG-UGAgGCCgucguuuGGCU-CACCGUccucGCCGg -3'
miRNA:   3'- -CCCaACUgUGG-------UCGAuGUGGCA----CGGC- -5'
18975 5' -55.2 NC_004683.1 + 41486 0.72 0.392766
Target:  5'- aGGGcc-ACACCAGCcACGCCGccaGCCGa -3'
miRNA:   3'- -CCCaacUGUGGUCGaUGUGGCa--CGGC- -5'
18975 5' -55.2 NC_004683.1 + 5937 0.72 0.401843
Target:  5'- aGGUUGuuCGCCAGCcagGCGCCuuggcggcgGUGCCGc -3'
miRNA:   3'- cCCAACu-GUGGUCGa--UGUGG---------CACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.