miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18975 5' -55.2 NC_004683.1 + 1777 0.66 0.714771
Target:  5'- aGGUcaGGCAgCAGC-GCGCCG-GCCGc -3'
miRNA:   3'- cCCAa-CUGUgGUCGaUGUGGCaCGGC- -5'
18975 5' -55.2 NC_004683.1 + 2132 0.66 0.725373
Target:  5'- uGGUgGugGCgGGCgugGCCGUGCUGg -3'
miRNA:   3'- cCCAaCugUGgUCGaugUGGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 2922 0.67 0.671669
Target:  5'- uGGcUGACGCCGaucCUGCGCgagauuCGUGCCGa -3'
miRNA:   3'- cCCaACUGUGGUc--GAUGUG------GCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 3289 0.67 0.659683
Target:  5'- cGGGggGuACACCGGCUGcCGCggcaaugCGUGUCu -3'
miRNA:   3'- -CCCaaC-UGUGGUCGAU-GUG-------GCACGGc -5'
18975 5' -55.2 NC_004683.1 + 3531 0.67 0.693337
Target:  5'- cGGGUgaucuGCGCCuGCUcaagcACACCG-GCCu -3'
miRNA:   3'- -CCCAac---UGUGGuCGA-----UGUGGCaCGGc -5'
18975 5' -55.2 NC_004683.1 + 3807 0.66 0.755559
Target:  5'- aGGG-UGAgGCCgucguuuGGCU-CACCGUccucGCCGg -3'
miRNA:   3'- -CCCaACUgUGG-------UCGAuGUGGCA----CGGC- -5'
18975 5' -55.2 NC_004683.1 + 3834 0.66 0.735883
Target:  5'- cGGUUGaACACC----GCGCCGUaGCCGu -3'
miRNA:   3'- cCCAAC-UGUGGucgaUGUGGCA-CGGC- -5'
18975 5' -55.2 NC_004683.1 + 4227 0.67 0.693337
Target:  5'- cGGUgacGugGCCGGcCUACGCCGacacuucagUGUCGa -3'
miRNA:   3'- cCCAa--CugUGGUC-GAUGUGGC---------ACGGC- -5'
18975 5' -55.2 NC_004683.1 + 5365 0.66 0.725373
Target:  5'- aGGccGACGgCGGCUACcUgGUGCCGu -3'
miRNA:   3'- cCCaaCUGUgGUCGAUGuGgCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 5937 0.72 0.401843
Target:  5'- aGGUUGuuCGCCAGCcagGCGCCuuggcggcgGUGCCGc -3'
miRNA:   3'- cCCAACu-GUGGUCGa--UGUGG---------CACGGC- -5'
18975 5' -55.2 NC_004683.1 + 6768 0.66 0.74629
Target:  5'- cGGGcgacacgUGccagccACACCAGCggcGCGCCGcgGCCa -3'
miRNA:   3'- -CCCa------AC------UGUGGUCGa--UGUGGCa-CGGc -5'
18975 5' -55.2 NC_004683.1 + 8578 0.66 0.714771
Target:  5'- cGGUcgUGuagcCACCAGCcGCGggagUCGUGCCGg -3'
miRNA:   3'- cCCA--ACu---GUGGUCGaUGU----GGCACGGC- -5'
18975 5' -55.2 NC_004683.1 + 13125 0.67 0.682527
Target:  5'- cGGaggGGCAUCGGCgGgACCGgUGCCGa -3'
miRNA:   3'- cCCaa-CUGUGGUCGaUgUGGC-ACGGC- -5'
18975 5' -55.2 NC_004683.1 + 13216 0.7 0.478987
Target:  5'- cGGGUcaucGGCACCGGUccCGCCGaUGCCc -3'
miRNA:   3'- -CCCAa---CUGUGGUCGauGUGGC-ACGGc -5'
18975 5' -55.2 NC_004683.1 + 18368 0.67 0.704089
Target:  5'- cGGGcccGACugCAGCacgacGCGCUGUGUCu -3'
miRNA:   3'- -CCCaa-CUGugGUCGa----UGUGGCACGGc -5'
18975 5' -55.2 NC_004683.1 + 19845 0.73 0.333068
Target:  5'- cGGGUUGGCgcgguucaGCCAGCggcaGCACCGgaacggugGCUGa -3'
miRNA:   3'- -CCCAACUG--------UGGUCGa---UGUGGCa-------CGGC- -5'
18975 5' -55.2 NC_004683.1 + 20210 0.71 0.420393
Target:  5'- aGGGaUUGACGCCggauccAGUUGCACCGcguuguaGCCGc -3'
miRNA:   3'- -CCC-AACUGUGG------UCGAUGUGGCa------CGGC- -5'
18975 5' -55.2 NC_004683.1 + 20472 0.68 0.599562
Target:  5'- cGGGUgcgcCGCCAGCUGCcagugcagaucccucGCCG-GCCu -3'
miRNA:   3'- -CCCAacu-GUGGUCGAUG---------------UGGCaCGGc -5'
18975 5' -55.2 NC_004683.1 + 21710 0.7 0.50975
Target:  5'- cGGG-UGGCGCUGGCaGCGCC--GCCGg -3'
miRNA:   3'- -CCCaACUGUGGUCGaUGUGGcaCGGC- -5'
18975 5' -55.2 NC_004683.1 + 21800 0.66 0.735883
Target:  5'- uGGGUUGAauCCGGCgGCGCUGccagcGCCa -3'
miRNA:   3'- -CCCAACUguGGUCGaUGUGGCa----CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.