miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 21411 0.71 0.334629
Target:  5'- -uGCGGCGGuCGCGCCGGaccaccGCCUCGc -3'
miRNA:   3'- guUGUCGUC-GCGCGGCUac----CGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 3499 0.71 0.304421
Target:  5'- cCAGCGGUgccAGgGUGCCGuUGGUCUCGa -3'
miRNA:   3'- -GUUGUCG---UCgCGCGGCuACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 3945 0.74 0.199323
Target:  5'- -cGCAGCGGCGUGCCuucgguGUGGUCgUCGGu -3'
miRNA:   3'- guUGUCGUCGCGCGGc-----UACCGG-AGCC- -5'
18978 3' -58.7 NC_004684.1 + 11903 0.81 0.062976
Target:  5'- gGACAGCGGCGCGCucgcgcccuucuccaCGGUGGCCuggUCGGc -3'
miRNA:   3'- gUUGUCGUCGCGCG---------------GCUACCGG---AGCC- -5'
18978 3' -58.7 NC_004684.1 + 63030 0.69 0.392605
Target:  5'- uCGGCGcGCGccGCGCGCUGGUcGGCUUCGu -3'
miRNA:   3'- -GUUGU-CGU--CGCGCGGCUA-CCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 15172 0.7 0.358689
Target:  5'- gGGCGGCcacCGCGCCGAUaaGGCCgUCGa -3'
miRNA:   3'- gUUGUCGuc-GCGCGGCUA--CCGG-AGCc -5'
18978 3' -58.7 NC_004684.1 + 42604 0.72 0.263109
Target:  5'- aCGGCGGUgAGCGCGCCGuugaucgcguUGGCCU-GGu -3'
miRNA:   3'- -GUUGUCG-UCGCGCGGCu---------ACCGGAgCC- -5'
18978 3' -58.7 NC_004684.1 + 20887 0.84 0.039718
Target:  5'- -cGCGGCuggcguuGCGUGCCGGUGGCUUCGGg -3'
miRNA:   3'- guUGUCGu------CGCGCGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 9905 0.7 0.351345
Target:  5'- aGACGGUGGCcuugaGCGUCGGgugccaccggcgcagGGCCUCGGc -3'
miRNA:   3'- gUUGUCGUCG-----CGCGGCUa--------------CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 4656 0.89 0.016435
Target:  5'- -uGCAGCAGCGCcUCGAUGGCCUCGGc -3'
miRNA:   3'- guUGUCGUCGCGcGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 22713 0.72 0.276351
Target:  5'- uGGCGGCGGCcucccacaGCGCCGuaacGGCCUCa- -3'
miRNA:   3'- gUUGUCGUCG--------CGCGGCua--CCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 11716 0.71 0.334629
Target:  5'- cCGACGGUcaGGCG-GCCGAcGGCCagcUCGGu -3'
miRNA:   3'- -GUUGUCG--UCGCgCGGCUaCCGG---AGCC- -5'
18978 3' -58.7 NC_004684.1 + 18443 0.73 0.232261
Target:  5'- gAGCGGCAccGCGcCGCCGGUcGGCUcCGGg -3'
miRNA:   3'- gUUGUCGU--CGC-GCGGCUA-CCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 37282 0.74 0.202946
Target:  5'- cCAGCAGCuggccgcGCGCGUCGAugcucggcgcgacgUGGCCcUCGGc -3'
miRNA:   3'- -GUUGUCGu------CGCGCGGCU--------------ACCGG-AGCC- -5'
18978 3' -58.7 NC_004684.1 + 26512 0.75 0.17922
Target:  5'- cCGGCGGCgaaccccgcugccAGCGCGCCGGUGGCggCGu -3'
miRNA:   3'- -GUUGUCG-------------UCGCGCGGCUACCGgaGCc -5'
18978 3' -58.7 NC_004684.1 + 38177 0.76 0.149434
Target:  5'- cCGACGGCGGUGguuuguacccguCGCCGuugagcuucuUGGCCUCGGg -3'
miRNA:   3'- -GUUGUCGUCGC------------GCGGCu---------ACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 26782 0.69 0.426696
Target:  5'- gAGCAGCA-CGCGCaccagcagguugaCGAUGGCCccgaggaUCGGc -3'
miRNA:   3'- gUUGUCGUcGCGCG-------------GCUACCGG-------AGCC- -5'
18978 3' -58.7 NC_004684.1 + 63642 0.69 0.401404
Target:  5'- uGAUGGCAGCG-GCCGAggaGGCCgagCGc -3'
miRNA:   3'- gUUGUCGUCGCgCGGCUa--CCGGa--GCc -5'
18978 3' -58.7 NC_004684.1 + 10073 0.7 0.383933
Target:  5'- gCAACGGgaugccgAGCGCGUCGAaGGCCUCc- -3'
miRNA:   3'- -GUUGUCg------UCGCGCGGCUaCCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 49120 0.7 0.366973
Target:  5'- gAGgAGgAGCcuGCGCCGGUGGCCgaucuguucagCGGg -3'
miRNA:   3'- gUUgUCgUCG--CGCGGCUACCGGa----------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.