miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 3' -63.7 NC_004684.1 + 3225 1.07 0.000313
Target:  5'- cACCGUGACCCCGGCGUACGGCCCCUCc -3'
miRNA:   3'- -UGGCACUGGGGCCGCAUGCCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 9879 0.67 0.329929
Target:  5'- cACCGgcgcagGGCCUCGGCGUAgaGGUCuuccacgcaggCCUCg -3'
miRNA:   3'- -UGGCa-----CUGGGGCCGCAUg-CCGG-----------GGAG- -5'
18979 3' -63.7 NC_004684.1 + 22257 0.68 0.255288
Target:  5'- cGCCGUGGCCCU-GCGgu--GCUCCUCg -3'
miRNA:   3'- -UGGCACUGGGGcCGCaugcCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 56053 0.7 0.192173
Target:  5'- cGCCGaUGACCCgcuggagcgcggcguCGGCGU-CGGCCUCg- -3'
miRNA:   3'- -UGGC-ACUGGG---------------GCCGCAuGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 12959 0.72 0.133179
Target:  5'- cCCGgcggcGGCCUCGGCGgugGCGGCCUCg- -3'
miRNA:   3'- uGGCa----CUGGGGCCGCa--UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 63225 0.74 0.09727
Target:  5'- aGCCG-GugCCCGGCGgaAUGGCCUCUa -3'
miRNA:   3'- -UGGCaCugGGGCCGCa-UGCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 2295 0.66 0.385238
Target:  5'- gACCaUGuuguCCUCGGCGUaguggccguGCGGCaCCUCg -3'
miRNA:   3'- -UGGcACu---GGGGCCGCA---------UGCCGgGGAG- -5'
18979 3' -63.7 NC_004684.1 + 64038 0.66 0.37697
Target:  5'- cACCGUGGCCauGuG-GUACGGCaCCCa- -3'
miRNA:   3'- -UGGCACUGGggC-CgCAUGCCG-GGGag -5'
18979 3' -63.7 NC_004684.1 + 12823 0.66 0.345116
Target:  5'- -gCGUcGACCUCGGCcugGUccACGGCCUCUg -3'
miRNA:   3'- ugGCA-CUGGGGCCG---CA--UGCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 1895 0.67 0.322523
Target:  5'- gGCCGaUGACaCCGGCG-ACcucGCCCUUCu -3'
miRNA:   3'- -UGGC-ACUGgGGCCGCaUGc--CGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 9466 0.72 0.147651
Target:  5'- uACCGgcgucGuCCUCGGUGUcCGGCUCCUCg -3'
miRNA:   3'- -UGGCa----CuGGGGCCGCAuGCCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 3125 0.8 0.037885
Target:  5'- cCCG-GGCCUCGuuGUGCGGCCCCUCg -3'
miRNA:   3'- uGGCaCUGGGGCcgCAUGCCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 65449 0.66 0.345116
Target:  5'- gACCGUcGCCCUGGUGgcccugGgGGCCgCCaUCg -3'
miRNA:   3'- -UGGCAcUGGGGCCGCa-----UgCCGG-GG-AG- -5'
18979 3' -63.7 NC_004684.1 + 9213 0.78 0.055434
Target:  5'- gACCaUGGCCUCGGCGgugAUGGCCCCa- -3'
miRNA:   3'- -UGGcACUGGGGCCGCa--UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 3032 0.67 0.315241
Target:  5'- cGCCGaUGGCCUCGGUGcuCGGCaccggaggcaCCUCg -3'
miRNA:   3'- -UGGC-ACUGGGGCCGCauGCCGg---------GGAG- -5'
18979 3' -63.7 NC_004684.1 + 25006 0.66 0.352896
Target:  5'- cGCCGcccagcgcgcUGAUCgCGGCG-GCGGCCaUCUCg -3'
miRNA:   3'- -UGGC----------ACUGGgGCCGCaUGCCGG-GGAG- -5'
18979 3' -63.7 NC_004684.1 + 66007 0.75 0.092253
Target:  5'- gGCCGgacGugCCCGGUGcgGCGGCCCUg- -3'
miRNA:   3'- -UGGCa--CugGGGCCGCa-UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 28423 0.67 0.340508
Target:  5'- uGCUGguugcgcuugGACCCCGGCGcgUacucguucaugaugcGCGGCUCCUg -3'
miRNA:   3'- -UGGCa---------CUGGGGCCGC--A---------------UGCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 41451 0.68 0.273518
Target:  5'- cGCCGgugucaguggggcUGACCCCGGCGgUGCuGGCCa--- -3'
miRNA:   3'- -UGGC-------------ACUGGGGCCGC-AUG-CCGGggag -5'
18979 3' -63.7 NC_004684.1 + 40369 0.68 0.267751
Target:  5'- gGCCuugggGGCCUCGGCGgugGCGG-CCUUCg -3'
miRNA:   3'- -UGGca---CUGGGGCCGCa--UGCCgGGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.