miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 36522 0.67 0.737599
Target:  5'- cCUGGGCAcggcGUUCGGGAucagcgaguACCGGGcGCAUu -3'
miRNA:   3'- -GGCUUGU----CGAGCCUU---------UGGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 24048 0.67 0.737599
Target:  5'- uCCGggUuguacaGGCUCGGcAGgCGGGugccGCGCa -3'
miRNA:   3'- -GGCuuG------UCGAGCCuUUgGCCCu---CGUG- -5'
18979 5' -54.9 NC_004684.1 + 30502 0.67 0.736566
Target:  5'- gUCGAACAGgUguugccaCGGcagcGCCGGGAuGCGCg -3'
miRNA:   3'- -GGCUUGUCgA-------GCCuu--UGGCCCU-CGUG- -5'
18979 5' -54.9 NC_004684.1 + 3031 0.67 0.736566
Target:  5'- gCCGAugGccucgguGCUCGGc-ACCGGaGGCACc -3'
miRNA:   3'- -GGCUugU-------CGAGCCuuUGGCCcUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 50928 0.67 0.727221
Target:  5'- gCCGGACAGCcCGGccucguCCaGGcGCACg -3'
miRNA:   3'- -GGCUUGUCGaGCCuuu---GGcCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 34540 0.67 0.727221
Target:  5'- cUCGGGCAGgaUGGGccGCuCGGGcAGCACa -3'
miRNA:   3'- -GGCUUGUCgaGCCUu-UG-GCCC-UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 10667 0.67 0.716751
Target:  5'- gCCGAAcCAGC-CGGAucGGCgGGGAaCGCc -3'
miRNA:   3'- -GGCUU-GUCGaGCCU--UUGgCCCUcGUG- -5'
18979 5' -54.9 NC_004684.1 + 57271 0.68 0.706201
Target:  5'- cCCGcACAGCUCGGccugugaCGGcGAGcCGCa -3'
miRNA:   3'- -GGCuUGUCGAGCCuuug---GCC-CUC-GUG- -5'
18979 5' -54.9 NC_004684.1 + 63461 0.68 0.706201
Target:  5'- gCCGccCAGUUcCGGcauUCGGGGGCGCg -3'
miRNA:   3'- -GGCuuGUCGA-GCCuuuGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 13190 0.68 0.706201
Target:  5'- gCCGGugggGCGGCgugcaccgCGcGAACCGGG-GCGCa -3'
miRNA:   3'- -GGCU----UGUCGa-------GCcUUUGGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 8135 0.68 0.698773
Target:  5'- aCCGcgucGguGCUCGGGugcagcaGaucgucaaccagaucGCCGGGGGCGCg -3'
miRNA:   3'- -GGCu---UguCGAGCCU-------U---------------UGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 45600 0.68 0.692381
Target:  5'- gCCGGACAgguccagcaccagcGCgUCGGucuuGCCGGGgaacaGGCGCa -3'
miRNA:   3'- -GGCUUGU--------------CG-AGCCuu--UGGCCC-----UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 43706 0.68 0.6849
Target:  5'- cCUGGGCAGCUUGGAugcgcugguauGCCuGGAcauaGCGCa -3'
miRNA:   3'- -GGCUUGUCGAGCCUu----------UGGcCCU----CGUG- -5'
18979 5' -54.9 NC_004684.1 + 13457 0.68 0.6849
Target:  5'- aCgGAGCAGCagcUGGAGGCCGaGGAcgGCAa -3'
miRNA:   3'- -GgCUUGUCGa--GCCUUUGGC-CCU--CGUg -5'
18979 5' -54.9 NC_004684.1 + 2702 0.68 0.6849
Target:  5'- cCCGGccuGGC-CGGu-GCCGGGGGCAa -3'
miRNA:   3'- -GGCUug-UCGaGCCuuUGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 33806 0.68 0.674171
Target:  5'- aUCGAGCGGUUCGGcg-UCGGcGGGCGg -3'
miRNA:   3'- -GGCUUGUCGAGCCuuuGGCC-CUCGUg -5'
18979 5' -54.9 NC_004684.1 + 1984 0.68 0.674171
Target:  5'- aUGGACAGCUCGaacuGCUGGccuGGGCGCu -3'
miRNA:   3'- gGCUUGUCGAGCcuu-UGGCC---CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 4121 0.68 0.674171
Target:  5'- cCCG-GCGGCUCcaGGu--CCaGGAGCGCa -3'
miRNA:   3'- -GGCuUGUCGAG--CCuuuGGcCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 22413 0.68 0.663403
Target:  5'- aCCGggUGGCg-GGccACgGGGAGCAUc -3'
miRNA:   3'- -GGCuuGUCGagCCuuUGgCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 54330 0.69 0.649365
Target:  5'- uCCGAgggcauagcacagcGCGGCggUGGAGauguuggcaaguGCCGGGGGCGg -3'
miRNA:   3'- -GGCU--------------UGUCGa-GCCUU------------UGGCCCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.