miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 14765 0.72 0.473331
Target:  5'- aCC-AGCGGUgcgUCGaacuGAACCGGGAGCGCa -3'
miRNA:   3'- -GGcUUGUCG---AGCc---UUUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 15593 0.66 0.787732
Target:  5'- -gGGGCGcGCUCGGugcgcuACCGGGuGCcCg -3'
miRNA:   3'- ggCUUGU-CGAGCCuu----UGGCCCuCGuG- -5'
18979 5' -54.9 NC_004684.1 + 15810 0.71 0.503588
Target:  5'- cCCuuGCuGgUCGGugucuCCGGGAGCACg -3'
miRNA:   3'- -GGcuUGuCgAGCCuuu--GGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 16495 0.71 0.499504
Target:  5'- aCCGAACAGCaccgucugggugCGGAuguagucgauguGCCGGGuGUACu -3'
miRNA:   3'- -GGCUUGUCGa-----------GCCUu-----------UGGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 18446 0.72 0.462467
Target:  5'- gUCGAGCGGCaccgcgccgccggUCGGcu-CCGGGGGCGg -3'
miRNA:   3'- -GGCUUGUCG-------------AGCCuuuGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 18556 0.69 0.648284
Target:  5'- aCCGAcagcacCAGCUCGGugccgucguccuGCuCGGGAGcCACg -3'
miRNA:   3'- -GGCUu-----GUCGAGCCuu----------UG-GCCCUC-GUG- -5'
18979 5' -54.9 NC_004684.1 + 20607 0.7 0.587783
Target:  5'- gCCGAGCGuCUaccUGGgcACCGGcGAGCGCc -3'
miRNA:   3'- -GGCUUGUcGA---GCCuuUGGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 22413 0.68 0.663403
Target:  5'- aCCGggUGGCg-GGccACgGGGAGCAUc -3'
miRNA:   3'- -GGCuuGUCGagCCuuUGgCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 22577 0.74 0.337942
Target:  5'- aCCGAGCGGUUggccgcugccaGGGAACCGgccuGGAGCGCg -3'
miRNA:   3'- -GGCUUGUCGAg----------CCUUUGGC----CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 23753 0.74 0.346045
Target:  5'- cUCGGugcGCAGUUCGG--GCCGuGGGGCGCg -3'
miRNA:   3'- -GGCU---UGUCGAGCCuuUGGC-CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 23997 0.74 0.354285
Target:  5'- gCGAGCuguuGCUCGGucGAGCCGGG-GCGg -3'
miRNA:   3'- gGCUUGu---CGAGCC--UUUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 24048 0.67 0.737599
Target:  5'- uCCGggUuguacaGGCUCGGcAGgCGGGugccGCGCa -3'
miRNA:   3'- -GGCuuG------UCGAGCCuUUgGCCCu---CGUG- -5'
18979 5' -54.9 NC_004684.1 + 25654 0.72 0.434473
Target:  5'- -aGAGCGGCggCGGu-ACCGGGcagGGCGCg -3'
miRNA:   3'- ggCUUGUCGa-GCCuuUGGCCC---UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 25856 0.66 0.797331
Target:  5'- gCCGGugGaGC-CGGAcgccaGGCCGGGGaucGCGCc -3'
miRNA:   3'- -GGCUugU-CGaGCCU-----UUGGCCCU---CGUG- -5'
18979 5' -54.9 NC_004684.1 + 27968 0.66 0.797331
Target:  5'- gCCGAACAGCcCGaGAGugC-GGAGUucgGCg -3'
miRNA:   3'- -GGCUUGUCGaGC-CUUugGcCCUCG---UG- -5'
18979 5' -54.9 NC_004684.1 + 28802 0.71 0.493406
Target:  5'- uCCGAGCugguGCUcgaCGGuguGACCGGGcGGUACa -3'
miRNA:   3'- -GGCUUGu---CGA---GCCu--UUGGCCC-UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 28885 0.79 0.184168
Target:  5'- gUCGAGCaccAGCUCGG-AACCGGGuGGCAUg -3'
miRNA:   3'- -GGCUUG---UCGAGCCuUUGGCCC-UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 30023 0.67 0.747875
Target:  5'- gCCGAgcuACAGCagaaGAcACCGGGGGCGa -3'
miRNA:   3'- -GGCU---UGUCGagc-CUuUGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 30502 0.67 0.736566
Target:  5'- gUCGAACAGgUguugccaCGGcagcGCCGGGAuGCGCg -3'
miRNA:   3'- -GGCUUGUCgA-------GCCuu--UGGCCCU-CGUG- -5'
18979 5' -54.9 NC_004684.1 + 33806 0.68 0.674171
Target:  5'- aUCGAGCGGUUCGGcg-UCGGcGGGCGg -3'
miRNA:   3'- -GGCUUGUCGAGCCuuuGGCC-CUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.