miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 16495 0.71 0.499504
Target:  5'- aCCGAACAGCaccgucugggugCGGAuguagucgauguGCCGGGuGUACu -3'
miRNA:   3'- -GGCUUGUCGa-----------GCCUu-----------UGGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 15810 0.71 0.503588
Target:  5'- cCCuuGCuGgUCGGugucuCCGGGAGCACg -3'
miRNA:   3'- -GGcuUGuCgAGCCuuu--GGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 65734 0.71 0.513861
Target:  5'- aCCGggUAGgUCGG-GACCGGagcuGCGCg -3'
miRNA:   3'- -GGCuuGUCgAGCCuUUGGCCcu--CGUG- -5'
18979 5' -54.9 NC_004684.1 + 59068 0.71 0.528384
Target:  5'- gCCGAacgguaaccagcgcgGCAGCUCGGcGGACaGGGcccGGCGCa -3'
miRNA:   3'- -GGCU---------------UGUCGAGCC-UUUGgCCC---UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 67468 0.7 0.56637
Target:  5'- gUCGuGgAGC-CGGAcACCGGGGGCGg -3'
miRNA:   3'- -GGCuUgUCGaGCCUuUGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 20607 0.7 0.587783
Target:  5'- gCCGAGCGuCUaccUGGgcACCGGcGAGCGCc -3'
miRNA:   3'- -GGCUUGUcGA---GCCuuUGGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 53363 0.69 0.598547
Target:  5'- cCCGGugGGU--GGGAGCCGaugacaccGGAGCGCg -3'
miRNA:   3'- -GGCUugUCGagCCUUUGGC--------CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 11565 0.69 0.598547
Target:  5'- cCCGAACAcccggccgucCUCGGuGACCGuGGuGCGCg -3'
miRNA:   3'- -GGCUUGUc---------GAGCCuUUGGC-CCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 59774 0.69 0.609339
Target:  5'- cCCGcGCAGCUCGGcgcaGGAaaGGGucaauGCGCg -3'
miRNA:   3'- -GGCuUGUCGAGCC----UUUggCCCu----CGUG- -5'
18979 5' -54.9 NC_004684.1 + 55785 0.69 0.609339
Target:  5'- uUCGAugGCGGCgugacCGGGugguCCGGuGAGCGCg -3'
miRNA:   3'- -GGCU--UGUCGa----GCCUuu--GGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 36864 0.69 0.630972
Target:  5'- gCCGAcCAGCgUCGGc-ACCGGGcGCGg -3'
miRNA:   3'- -GGCUuGUCG-AGCCuuUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 33881 0.69 0.641794
Target:  5'- aCCaGGCGGUgCGGGcgguGCCGGuGGGCGCg -3'
miRNA:   3'- -GGcUUGUCGaGCCUu---UGGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 36719 0.69 0.641794
Target:  5'- aCGAaccGCAGCUCcacgcgugccuGGAAcgucucACCGGGGGcCACc -3'
miRNA:   3'- gGCU---UGUCGAG-----------CCUU------UGGCCCUC-GUG- -5'
18979 5' -54.9 NC_004684.1 + 13045 0.69 0.641794
Target:  5'- gCCGcguCGGCg-GGAGcACCGGGGGUGCc -3'
miRNA:   3'- -GGCuu-GUCGagCCUU-UGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 18556 0.69 0.648284
Target:  5'- aCCGAcagcacCAGCUCGGugccgucguccuGCuCGGGAGcCACg -3'
miRNA:   3'- -GGCUu-----GUCGAGCCuu----------UG-GCCCUC-GUG- -5'
18979 5' -54.9 NC_004684.1 + 54330 0.69 0.649365
Target:  5'- uCCGAgggcauagcacagcGCGGCggUGGAGauguuggcaaguGCCGGGGGCGg -3'
miRNA:   3'- -GGCU--------------UGUCGa-GCCUU------------UGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 22413 0.68 0.663403
Target:  5'- aCCGggUGGCg-GGccACgGGGAGCAUc -3'
miRNA:   3'- -GGCuuGUCGagCCuuUGgCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 1984 0.68 0.674171
Target:  5'- aUGGACAGCUCGaacuGCUGGccuGGGCGCu -3'
miRNA:   3'- gGCUUGUCGAGCcuu-UGGCC---CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 4121 0.68 0.674171
Target:  5'- cCCG-GCGGCUCcaGGu--CCaGGAGCGCa -3'
miRNA:   3'- -GGCuUGUCGAG--CCuuuGGcCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 33806 0.68 0.674171
Target:  5'- aUCGAGCGGUUCGGcg-UCGGcGGGCGg -3'
miRNA:   3'- -GGCUUGUCGAGCCuuuGGCC-CUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.