miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 3183 1.12 0.000907
Target:  5'- cCCGAACAGCUCGGAAACCGGGAGCACg -3'
miRNA:   3'- -GGCUUGUCGAGCCUUUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 58082 0.85 0.072124
Target:  5'- aCCGuGCAGCUCG---ACCGGGAGCGCg -3'
miRNA:   3'- -GGCuUGUCGAGCcuuUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 59694 0.8 0.152667
Target:  5'- gCCGAGCuGCgCGGGGugCGGGuGCGCa -3'
miRNA:   3'- -GGCUUGuCGaGCCUUugGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 28885 0.79 0.184168
Target:  5'- gUCGAGCaccAGCUCGG-AACCGGGuGGCAUg -3'
miRNA:   3'- -GGCUUG---UCGAGCCuUUGGCCC-UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 10005 0.78 0.209517
Target:  5'- gCCgGAACuGC-CGGAccugccgcgcgccGACCGGGAGCGCa -3'
miRNA:   3'- -GG-CUUGuCGaGCCU-------------UUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 48946 0.75 0.322155
Target:  5'- gCCGAACGGCacgucggCGGGcgggguGGCCGGGgcgGGCGCg -3'
miRNA:   3'- -GGCUUGUCGa------GCCU------UUGGCCC---UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 22577 0.74 0.337942
Target:  5'- aCCGAGCGGUUggccgcugccaGGGAACCGgccuGGAGCGCg -3'
miRNA:   3'- -GGCUUGUCGAg----------CCUUUGGC----CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 60472 0.74 0.337942
Target:  5'- gCCGGGCAGUuccUCGGGcaacACCGGGuGCAg -3'
miRNA:   3'- -GGCUUGUCG---AGCCUu---UGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 64526 0.74 0.337942
Target:  5'- aCCGAugacgcccaGCGGCUCGGcggccuugguGACCGGGuugguGCGCa -3'
miRNA:   3'- -GGCU---------UGUCGAGCCu---------UUGGCCCu----CGUG- -5'
18979 5' -54.9 NC_004684.1 + 23753 0.74 0.346045
Target:  5'- cUCGGugcGCAGUUCGG--GCCGuGGGGCGCg -3'
miRNA:   3'- -GGCU---UGUCGAGCCuuUGGC-CCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 23997 0.74 0.354285
Target:  5'- gCGAGCuguuGCUCGGucGAGCCGGG-GCGg -3'
miRNA:   3'- gGCUUGu---CGAGCC--UUUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 34264 0.74 0.354285
Target:  5'- uUGAGCgugAGCUCGGGcguGCCGGuGAGCAg -3'
miRNA:   3'- gGCUUG---UCGAGCCUu--UGGCC-CUCGUg -5'
18979 5' -54.9 NC_004684.1 + 48356 0.73 0.42505
Target:  5'- aCGGGCGGuCUCGGAGugcuuGCCGGuGugguGCACg -3'
miRNA:   3'- gGCUUGUC-GAGCCUU-----UGGCC-Cu---CGUG- -5'
18979 5' -54.9 NC_004684.1 + 25654 0.72 0.434473
Target:  5'- -aGAGCGGCggCGGu-ACCGGGcagGGCGCg -3'
miRNA:   3'- ggCUUGUCGa-GCCuuUGGCCC---UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 7410 0.72 0.434473
Target:  5'- aCCGAGCAcGCgUCGGccauGGCCGGGuuCGCg -3'
miRNA:   3'- -GGCUUGU-CG-AGCCu---UUGGCCCucGUG- -5'
18979 5' -54.9 NC_004684.1 + 18446 0.72 0.462467
Target:  5'- gUCGAGCGGCaccgcgccgccggUCGGcu-CCGGGGGCGg -3'
miRNA:   3'- -GGCUUGUCG-------------AGCCuuuGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 14765 0.72 0.473331
Target:  5'- aCC-AGCGGUgcgUCGaacuGAACCGGGAGCGCa -3'
miRNA:   3'- -GGcUUGUCG---AGCc---UUUGGCCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 36892 0.72 0.473331
Target:  5'- gUCGGcaacCAGCUCGGAcuGGCCGGuGGCAUc -3'
miRNA:   3'- -GGCUu---GUCGAGCCU--UUGGCCcUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 333 0.71 0.483318
Target:  5'- gCGAuCAGCUCGGuguuaccgcGCCGGGGGUu- -3'
miRNA:   3'- gGCUuGUCGAGCCuu-------UGGCCCUCGug -5'
18979 5' -54.9 NC_004684.1 + 28802 0.71 0.493406
Target:  5'- uCCGAGCugguGCUcgaCGGuguGACCGGGcGGUACa -3'
miRNA:   3'- -GGCUUGu---CGA---GCCu--UUGGCCC-UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.